Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi07g01177 | ATGAGCTTTCAAGATATCGAGGCTGGTCGCCCCTTTGCTTCTTCGAGGAGAGACCTCATCAATGGCAAACAAGATCCCACGCAAGCTGTTGCTTCGGGTATATTTCAGATTAATACTGCCGTCGCTACGTTTCAGAGGCTTGTTAATACCTTAGGAACACCGAAGGATACGCCTGAGCTACGCGAGAAGCTGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGACACCTCTGCTAAACTTAAACAAGCCAGCGAAATAGATCATCACGCTGAAGTTAATGCCAGCAAGAAAATTGCAGATGCTAAACTCGCGAAAGATTTTCAAGCAGTGTTGAAAGAATTTCAGAAGGCTCAACGACTTGCCGCTGAGAGGGAAACAGCATATACACCTTTTGTTCCTCAAACTGTTCTACCTTCTAGCTACACAGCTGGCGAGGCAGATGCAAGCTCAGAAAAGAATCTTGAACAGCGTGCCCTCCTTGTAGAATCCAGGAGACAAGAGGTCTTGCTGTTGGACAATGAAATAGCCTTCAACGAGGCAATAATTGAGGAAAGAGAGCAAGGCATTCATGAAATCCAGCAGCAAATTGGAGAAGTAAATGAAATTTTTAAAGATCTTGCGGTTCTAGTCCATGAACAGGGAGCCATGATTGATTTGTGTGTAGCTCAAGTTATTCATGTATATATCACCATGGTTGTAGATGATATTGGATCCAACATAGAGGGTGCCCATGCTGCAACGTCACAGGGAACAACTCAGCTTGTAAAAGCTTCAAAAACACAAAGATCGAATTCATCTCTGGCTTGCTTACTTTTGGTGATATTTGGTATTATCCTTCTCATTGTGATCATAATAGTTGTTGCTTAA | 873 | 42.84 | MSFQDIEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQTVLPSSYTAGEADASSEKNLEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDLCVAQVIHVYITMVVDDIGSNIEGAHAATSQGTTQLVKASKTQRSNSSLACLLLVIFGIILLIVIIIVVA | 290 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 17275748 | 17281274 | + | Lsi07G011770.1 | Lsi07g01177 | 667599 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi07g01177 | 290 | PANTHER | SYNTAXIN OF PLANTS PROTEIN | 5 | 224 | - | - | |
| Lsi07g01177 | 290 | PANTHER | SYNTAXIN OF PLANTS PROTEIN | 224 | 288 | - | - | |
| Lsi07g01177 | 290 | SUPERFAMILY | t-snare proteins | 24 | 216 | IPR010989 | GO:0016020|GO:0016192 | |
| Lsi07g01177 | 290 | Gene3D | - | 21 | 134 | - | - | |
| Lsi07g01177 | 290 | Pfam | Syntaxin-like protein | 31 | 130 | IPR006011 | GO:0016020 | |
| Lsi07g01177 | 290 | PANTHER | SYNTAXIN | 5 | 224 | IPR045242 | - | |
| Lsi07g01177 | 290 | PANTHER | SYNTAXIN | 224 | 288 | IPR045242 | - | |
| Lsi07g01177 | 290 | SMART | tSNARE_6 | 176 | 259 | IPR000727 | - | |
| Lsi07g01177 | 290 | CDD | SynN | 24 | 147 | IPR006011 | GO:0016020 | |
| Lsi07g01177 | 290 | Gene3D | - | 174 | 290 | - | - | |
| Lsi07g01177 | 290 | Pfam | SNARE domain | 234 | 285 | IPR000727 | - | |
| Lsi07g01177 | 290 | CDD | SNARE_Qa | 184 | 258 | - | - | |
| Lsi07g01177 | 290 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 181 | 220 | IPR000727 | - | |
| Lsi07g01177 | 290 | SMART | SynN_4 | 16 | 128 | IPR006011 | GO:0016020 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi07g01177 | Lsi-Chr7:17275748 | Lsi11g00612 | Lsi-Chr11:6525802 | 4.20E-10 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi07g01177 | - | K08488 | bhj:120089793 | 450.669 |