Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01178 ATGGTTCAACACCTCAAAATAGGAACTGGAGGTCAAAACACCGACACGACGTCGTCGGAGTTGTTTCTTACTCTTCTTGTGTTTATTGACCGTGAGATGGACGGGACTGCTAATGGCGGCGATGCTGGATTGGCCTCCGGGAGTGGTAACTCTCATCCGACGGTGCCGGCTCCTATCACTAATTCTAACGCGCCTCCACCGTTTCTGAGTAAGACATATGATATGGTGGATGACCCGGCTACCGATGCGGTTGTGTCCTGGAGCCCTACGAATAATAGCTTTGTGGTTTGGAACCCGCCTGAGTTCGCTAGGGATCTTTTGCCCAAATACTTCAAGCATAATAACTTCTCCAGCTTCGTCAGGCAGCTCAATACCTATGGCTTCAGGAAAGTAGATCCAGACCGTTGGGAATTTGCTAATGAAGGCTTCTTAAGAGGTCAGAAACACCTGCTTAAGAGTATTACTCGGCGAAAACCTGTCCATGGGCACAGTCAGCAACAACCACAGCAGTCTCATGGACAAAGTTCCTCAGTCGGAGCTTGTGTGGAAGTTGGTAAGTTTGGTCTGGAGGAAGAGGTTGAGAGGCTTAAAAGAGACAAAAATGTACTCATGCAGGAACTTGTGAGATTGAGGCAGCAGCAACAGACTACTGACAGCCAGCTGCAAACTATGGTCCAGCGTCTACAGGGGATGGAGCAGCGACAGCAGCAGATGATGTCATTCCTTGCAAAGGCTGTGCAAAGCCCTGGCTTTTTGGCTCAGTTTGTGCAGCAGCAAAATGAAAGCACTAGACGGATAAGTGAAGCTAATAAAAAGCGAAGGCTAAAGCAGGATGGAATTGCTGAGTCTGAGCATTCTACTGTTCCTGATGGGCAAATTGTGAAGTATCAACCTCTCATGAATGAGGCAGCAAAAACAATGCTAAGGCAGATAATGAAAATAGATACTTCATGTTTGGAACCATTGAACCACGATACTGACAGTTTCCTACTTAGTGATGGTTTGAAATCGTCATGTGCAGCAATGGACAATGGGAACTCTTCCAGTTCTGTATCAGGCGTGACTCTTCAAGAGGTACCTCTGACCTCATCTTTTAATTCAGCTGCTTCTGGTGTTGCTCCTCACGGCCCCTCAGCAGCCAAATCAGAAATTCAATCGTCACCCCAAGCTACAAATTCTGACAAGGTTTCAACTGCTCCCTTTTCTGTTAGTGCTGTGCGGGGTCCAGGGGCACGAGAAGCTTCTTCCCTGTTGGTTTCTGAGACAGATGTAATCATGCCTGAGCTTTCCCAAATATCTGAAATGGTATCTGAGAACATTCTTGATGTTCCTGGAGTGGATTATAGGGTACCCGATGCAGGAAATGGTGCATTTATCAGTCCGAGTTTTTTGGATGCTAATGGAACTATTCCTATAGAGATTGATAATATATCTCCTGATGCTGATATTGATGCCTTGCTAGACAATTCCAACTTCTGGGATGATTTGCTTGTGCAAAGTCCATGTCGGGACGAAGAGGTTGACTTTATGGTTGGAGGAGGATTACCAAAGGCGAACGATATGCAGCCAGTAGAAAATGCGTGGGACAAATCTAAACATGTGGATAAACTTACAGAACAGATGGGCCTTCTCACTTCAGAAATGAAAAGGGTTTGA 1656 46.07 MVQHLKIGTGGQNTDTTSSELFLTLLVFIDREMDGTANGGDAGLASGSGNSHPTVPAPITNSNAPPPFLSKTYDMVDDPATDAVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPVHGHSQQQPQQSHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDSQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESTRRISEANKKRRLKQDGIAESEHSTVPDGQIVKYQPLMNEAAKTMLRQIMKIDTSCLEPLNHDTDSFLLSDGLKSSCAAMDNGNSSSSVSGVTLQEVPLTSSFNSAASGVAPHGPSAAKSEIQSSPQATNSDKVSTAPFSVSAVRGPGAREASSLLVSETDVIMPELSQISEMVSENILDVPGVDYRVPDAGNGAFISPSFLDANGTIPIEIDNISPDADIDALLDNSNFWDDLLVQSPCRDEEVDFMVGGGLPKANDMQPVENAWDKSKHVDKLTEQMGLLTSEMKRV 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17282040 17289327 - Lsi07G011780.1 Lsi07g01178 667600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01178 551 Gene3D - 60 158 IPR036388 -
Lsi07g01178 551 MobiDBLite consensus disorder prediction 380 397 - -
Lsi07g01178 551 SUPERFAMILY Winged helix DNA-binding domain 64 157 IPR036390 -
Lsi07g01178 551 Coils Coil 186 213 - -
Lsi07g01178 551 PRINTS Heat shock factor (HSF) domain signature 119 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi07g01178 551 PRINTS Heat shock factor (HSF) domain signature 68 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi07g01178 551 PRINTS Heat shock factor (HSF) domain signature 106 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi07g01178 551 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 39 535 IPR027725 -
Lsi07g01178 551 Pfam HSF-type DNA-binding 68 157 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi07g01178 551 ProSitePatterns HSF-type DNA-binding domain signature. 107 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi07g01178 551 MobiDBLite consensus disorder prediction 156 178 - -
Lsi07g01178 551 MobiDBLite consensus disorder prediction 39 58 - -
Lsi07g01178 551 MobiDBLite consensus disorder prediction 367 397 - -
Lsi07g01178 551 MobiDBLite consensus disorder prediction 43 58 - -
Lsi07g01178 551 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 39 535 - -
Lsi07g01178 551 SMART hsfneu3 64 157 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi07g01178 551 MobiDBLite consensus disorder prediction 160 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01178 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101207437 915.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00219 Lsi-Chr1:1989718 Lsi07g01178 Lsi-Chr7:17282040 1.37E-56 dispersed
Lsi02g02257 Lsi-Chr2:29120389 Lsi07g01178 Lsi-Chr7:17282040 8.33E-83 dispersed
Lsi03g01940 Lsi-Chr3:30800574 Lsi07g01178 Lsi-Chr7:17282040 2.08E-21 dispersed
Lsi04g00994 Lsi-Chr4:10876336 Lsi07g01178 Lsi-Chr7:17282040 1.72E-67 dispersed
Lsi05g01869 Lsi-Chr5:25912314 Lsi07g01178 Lsi-Chr7:17282040 2.48E-67 dispersed
Lsi06g00879 Lsi-Chr6:18335690 Lsi07g01178 Lsi-Chr7:17282040 5.27E-55 dispersed
Lsi07g01178 Lsi-Chr7:17282040 Lsi08g01589 Lsi-Chr8:23892060 7.23E-81 dispersed
Lsi11g00263 Lsi-Chr11:2668237 Lsi07g01178 Lsi-Chr7:17282040 1.73E-51 dispersed
Lsi07g01178 Lsi-Chr7:17282040 Lsi05g00963 Lsi-Chr5:16808481 2.38E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g705 Blo02g00985 . Bda06g01262 Bda08g00638 . . . . Cmo06g00645 Cmo16g01225 . . . . Sed10g1395 Cpe14g00974 . Bhi11g00015 Tan08g0173 Cmetu05g1605 . . Mch10g1679 . Cla10g00139 Cam10g0138 Cec10g0148 Cco10g0148 Clacu10g0142 Cmu10g0989 Cre10g0400 . . . . Lsi07g01178 . . Cme06g02455 . . . . . . Bma05g00705 . . . . Cma06g00639 Cma16g01175 Car06g00570 Car16g01108 . . . . . . . . . . . . . . . . . Csa03g00150 Chy06g02159 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g01637 . 37 237 HSF AT4G17750 59.6 1.9e-61 233.8
Lsi05g00963 . 40 243 HSF AT4G17750 54.8 5.2e-59 225.7
Lsi08g01589 . 44 244 HSF AT4G17750 50.9 9.5e-53 204.9
Lsi11g00182 . 65 248 HSF AT4G17750 51.7 4.6e-47 186.0
Lsi02g00833 CCT,ECH 13 192 HSF AT4G17750 50.8 8.1e-44 175.3
Lsi04g01548 CCT 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Lsi01g00978 . 5 177 HSF AT4G17750 51.4 3.0e-38 156.8
Lsi09g00296 . 438 560 HSF AT4G17750 60.2 8.6e-38 155.2
Lsi05g00963 . 41 247 HSF AT5G16820 56.1 1.2e-60 231.1
Lsi05g01637 . 9 242 HSF AT5G16820 53.5 6.0e-60 228.8
Lsi02g02257 . 46 269 HSF AT5G16820 52.6 3.1e-56 216.5
Lsi11g00182 . 67 248 HSF AT5G16820 51.1 2.1e-44 177.2
Lsi06g00879 CCT 10 176 HSF AT5G16820 51.6 5.6e-42 169.1
Lsi07g01178 . 45 547 HSF AT1G32330 53.1 6.1e-121 431.4
Lsi05g01637 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Lsi05g00963 . 11 227 HSF AT1G32330 51.5 1.3e-59 227.6
Lsi02g02257 . 34 254 HSF AT1G32330 50.9 3.6e-57 219.5
Lsi10g01556 . 8 112 HSF AT1G32330 70.5 1.4e-40 164.5
Lsi05g00963 . 41 263 HSF AT3G02990 53.5 4.3e-63 239.2
Lsi05g01637 . 38 241 HSF AT3G02990 56.7 4.4e-60 229.2
Lsi02g02257 . 46 269 HSF AT3G02990 52.4 2.4e-58 223.4
Lsi06g00879 CCT 10 172 HSF AT3G02990 50.3 3.5e-41 166.4
Lsi05g01637 . 9 237 HSF AT2G26150 56.2 4.3e-68 255.4
Lsi02g02257 . 34 254 HSF AT2G26150 54.5 2.4e-63 239.6
Lsi07g01178 . 40 275 HSF AT2G26150 56.1 1.7e-61 233.4
Lsi05g01637 . 26 218 HSF AT5G43840 54.4 1.5e-55 213.4
Lsi05g00963 . 29 349 HSF AT3G22830 52.0 2.3e-89 326.2
Lsi07g01178 . 61 274 HSF AT3G22830 58.9 8.3e-63 238.0
Lsi08g01589 . 33 255 HSF AT3G22830 50.2 9.5e-59 224.6
Lsi11g00182 . 55 253 HSF AT3G22830 50.7 1.7e-52 203.8
Lsi05g00963 . 26 323 HSF AT3G51910 52.3 8.0e-70 260.8
Lsi02g02257 . 33 346 HSF AT3G51910 50.2 2.3e-69 259.2
Lsi08g01589 . 33 225 HSF AT3G51910 52.8 1.2e-49 193.7
Lsi08g01589 . 33 232 HSF AT3G63350 50.5 7.6e-47 184.5
Lsi10g01556 . 5 144 HSF AT3G63350 53.8 9.3e-37 151.0
Lsi11g00182 . 60 252 HSF AT5G54070 53.6 1.3e-50 197.2
Lsi01g00978 . 2 296 HSF AT4G36990 52.3 1.3e-70 263.5
Lsi09g00296 . 461 783 HSF AT4G11660 50.6 1.2e-79 293.9
Lsi01g00978 . 2 108 HSF AT4G11660 71.0 1.5e-42 170.6
Lsi08g01481 CCT 16 114 HSF AT4G11660 64.2 1.1e-37 154.5
Lsi06g00597 . 27 120 HSF AT4G11660 69.1 3.3e-37 152.9
Lsi07g01178 . 65 158 HSF AT4G11660 69.1 1.6e-36 150.6
Lsi01g01902 . 7 209 HSF AT2G41690 54.7 9.2e-49 190.7
Lsi03g01558 . 43 243 HSF AT2G41690 55.5 4.3e-46 181.8
Lsi08g01481 CCT 9 367 HSF AT1G46264 50.8 3.1e-82 302.4
Lsi06g00597 . 19 202 HSF AT1G46264 53.8 1.8e-50 196.8
Lsi01g00978 . 4 198 HSF AT1G46264 51.2 2.9e-48 189.5
Lsi07g01178 . 65 170 HSF AT1G46264 73.6 3.4e-41 166.0
Lsi03g01558 . 41 137 HSF AT1G46264 71.1 1.4e-37 154.1
Lsi10g01556 . 5 105 HSF AT1G46264 67.3 5.1e-37 152.1
Lsi05g01637 . 29 141 HSF AT1G46264 60.2 1.1e-36 151.0
Lsi11g00263 CCT 10 181 HSF AT3G24520 64.5 2.0e-62 236.5
Lsi05g01637 . 37 237 HSF AT4G17750 59.6 1.9e-61 233.8
Lsi05g00963 . 40 243 HSF AT4G17750 54.8 5.2e-59 225.7
Lsi08g01589 . 44 244 HSF AT4G17750 50.9 9.5e-53 204.9
Lsi11g00182 . 65 248 HSF AT4G17750 51.7 4.6e-47 186.0
Lsi02g00833 CCT,ECH 13 192 HSF AT4G17750 50.8 8.1e-44 175.3
Lsi04g01548 CCT 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Lsi01g00978 . 5 177 HSF AT4G17750 51.4 3.0e-38 156.8
Lsi09g00296 . 438 560 HSF AT4G17750 60.2 8.6e-38 155.2
Lsi05g00963 . 41 247 HSF AT5G16820 56.1 1.2e-60 231.1
Lsi05g01637 . 9 242 HSF AT5G16820 53.5 6.0e-60 228.8
Lsi02g02257 . 46 269 HSF AT5G16820 52.6 3.1e-56 216.5
Lsi11g00182 . 67 248 HSF AT5G16820 51.1 2.1e-44 177.2
Lsi06g00879 CCT 10 176 HSF AT5G16820 51.6 5.6e-42 169.1
Lsi07g01178 . 45 547 HSF AT1G32330 53.1 6.1e-121 431.4
Lsi05g01637 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Lsi05g00963 . 11 227 HSF AT1G32330 51.5 1.3e-59 227.6
Lsi02g02257 . 34 254 HSF AT1G32330 50.9 3.6e-57 219.5
Lsi10g01556 . 8 112 HSF AT1G32330 70.5 1.4e-40 164.5
Lsi05g00963 . 41 263 HSF AT3G02990 53.5 4.3e-63 239.2
Lsi05g01637 . 38 241 HSF AT3G02990 56.7 4.4e-60 229.2
Lsi02g02257 . 46 269 HSF AT3G02990 52.4 2.4e-58 223.4
Lsi06g00879 CCT 10 172 HSF AT3G02990 50.3 3.5e-41 166.4
Lsi05g01637 . 9 237 HSF AT2G26150 56.2 4.3e-68 255.4
Lsi02g02257 . 34 254 HSF AT2G26150 54.5 2.4e-63 239.6
Lsi07g01178 . 40 275 HSF AT2G26150 56.1 1.7e-61 233.4
Lsi05g01637 . 26 218 HSF AT5G43840 54.4 1.5e-55 213.4
Lsi05g00963 . 29 349 HSF AT3G22830 52.0 2.3e-89 326.2
Lsi07g01178 . 61 274 HSF AT3G22830 58.9 8.3e-63 238.0
Lsi08g01589 . 33 255 HSF AT3G22830 50.2 9.5e-59 224.6
Lsi11g00182 . 55 253 HSF AT3G22830 50.7 1.7e-52 203.8
Lsi05g00963 . 26 323 HSF AT3G51910 52.3 8.0e-70 260.8
Lsi02g02257 . 33 346 HSF AT3G51910 50.2 2.3e-69 259.2
Lsi08g01589 . 33 225 HSF AT3G51910 52.8 1.2e-49 193.7
Lsi08g01589 . 33 232 HSF AT3G63350 50.5 7.6e-47 184.5
Lsi10g01556 . 5 144 HSF AT3G63350 53.8 9.3e-37 151.0
Lsi11g00182 . 60 252 HSF AT5G54070 53.6 1.3e-50 197.2
Lsi01g00978 . 2 296 HSF AT4G36990 52.3 1.3e-70 263.5
Lsi09g00296 . 461 783 HSF AT4G11660 50.6 1.2e-79 293.9
Lsi01g00978 . 2 108 HSF AT4G11660 71.0 1.5e-42 170.6
Lsi08g01481 CCT 16 114 HSF AT4G11660 64.2 1.1e-37 154.5
Lsi06g00597 . 27 120 HSF AT4G11660 69.1 3.3e-37 152.9
Lsi07g01178 . 65 158 HSF AT4G11660 69.1 1.6e-36 150.6
Lsi01g01902 . 7 209 HSF AT2G41690 54.7 9.2e-49 190.7
Lsi03g01558 . 43 243 HSF AT2G41690 55.5 4.3e-46 181.8
Lsi08g01481 CCT 9 367 HSF AT1G46264 50.8 3.1e-82 302.4
Lsi06g00597 . 19 202 HSF AT1G46264 53.8 1.8e-50 196.8
Lsi01g00978 . 4 198 HSF AT1G46264 51.2 2.9e-48 189.5
Lsi07g01178 . 65 170 HSF AT1G46264 73.6 3.4e-41 166.0
Lsi03g01558 . 41 137 HSF AT1G46264 71.1 1.4e-37 154.1
Lsi10g01556 . 5 105 HSF AT1G46264 67.3 5.1e-37 152.1
Lsi05g01637 . 29 141 HSF AT1G46264 60.2 1.1e-36 151.0
Lsi11g00263 CCT 10 181 HSF AT3G24520 64.5 2.0e-62 236.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004373 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25672 PF00447 HSF_DNA-bind 3.10E-33 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01178 Lsi_Chr07 FPKM 7.003779 9.769727 0.642588 0.798387 6.625722 5.651968 6.527388 0.0 0.0 0.0