Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01179 ATGGTTTCGAGGTCTTATTCTAACTTGTTGGAGCTTGCTTCTGGTGGTTGTTCTCCAACTTTTGGCCTTGGCCGAGAGAAGAGGAGGCTTCCTAGAGTGGCCACTGTGGCTGGAGTCTTGTCTGAGCTTGATGATGATAGCTGCAACAGCACTGGCTCGGATGCCCCTTCGTCAGTAGCACAAGACCGGATGATCATTGTTGGGAATCAACTCCCTATTCGAGCGAATCGAGACGAGAATGGAGATTGGGGGTTTAGTATGGATGAGGATTCACTTCTTTTACAGCTTAAAGATGGGCTTGGAGAAGATGTGGAAGTGATTTATATTGGTTGTCTTAGAGAGGAGGTTGATCCAAGGGAGCAAGATGATGTTGCACAAACTCTTTTGGACCGATTCAAGTGCGTCCCAACGTTCCTTCCTCCGGAGCTTTTTACTAAATTTTATCATGGATTCTGCAAGCAACATTTATGGCCACTGTTTCACTATATGCTTCCCCTGTCACCGGATCTTGGTGGCCGATTTGATCGGTCTCTTTGGCAAGCCTATCTTTCGGTGAATAAGATATTTGCAGATAAAGTTATGGAAGTGATTAGTCCTGATGATGACTTTGTTTGGGTTCATGATTACCATTTGATGGTTTTGCCAACATTTTTGAGGAAGAGGTTCAACAGGGTGAAGCTTGGATTCTTCCTACACAGTCCATTTCCTTCGTCTGAGATTTATCGAACCCTTCCTGTTAGAGATGAACTTCTTCGGGCACTTTTGAACTCTGATCTTATTGGCTTCCACACGTTTGATTATGCTAGGCATTTTTTATCTTGCTGCAGCAGAATGCTTGGTCTGTCTTATCAATCTAAGCGAGGTTACATCGGGCTTGAATACTACGGTCGTACTGTGAGCATTAAGATTCTTCCTGTTGGTATTCATATAGGCCAGCTCCAAAATGTTTTGAATCTCCCCGAGACTGTATCCAAAGTCGCAGAATTGCAAGATCGGTTCAAGGGTCAAACTGTTTTGCTTGGGGTAGATGATATGGACATATTTAAGGGGATCAGCCTGAAACTTTTGGCATTTGAACAATTGCTCCGACAACATCCTGAGAGATGGGGTAAAGCTGTGTTAGTACAGATTGCAAACCCTGCAAGAGGCAGAGGGAAAGATGTACAGGAGGTTGTGGCTGAAACTACTGCGACAGTGGATAGAATTAATACAACATTCAGAAGGCCAGGATATGAGCCTGTGATTTTGATAAACACTCCCTTGCAGTTTTACGAGCGAATCGCTTACTATGCAATTGCTGAGTGCTGCCTTGTTACTGCAGTGAGAGATGGAATGAATCTTATACCTTACGAATATATTATATGTCGACAAGGCAATGAGAAGCTTGATGATGTTCTCGGGCTAAATCCTTCAACTGCAAAGAAGAGCATGTTAGTGTTGTCTGAGTTTATTGGGTGTTCCCCATCCCTCAGTGGAGCTATTCGGGTTAACCCATGGAATATTGAAGCTGTCACCGAAGCAATGGATTCTGCCCTGGTAATCCCCGAGGCAGAAAAGCAATTGCGACATGAAAAGCATTATAGGTATGTTAGTACGCATGATGTTGCATATTGGGCACGCAGCTTTTTGCAGGATCTGGGCAGGGCCTGTAGAGACCATTCAATGAGAAGGTGCTGGGGCATAGGTTTCGGTTTAGGATTTCGAGTTATTGCCCTGGATCCAGATTTTAGGAAGCTTTCAGTTGATCATATTGTTTCAGTGTATAAGAGAACCTGCCACCGAGCAATTTTGTTAGATTATGATGGTATCATGATGCTTCCTGGATCAATTAGCATGAATCCAACTTCAGAAGCCCTTGGAATCTTGAACAATTTGTGTAAAGATCCTAAAAATGTTGTGTTCCTTGTTAGTGGAAAGGACCGAAAAACTCTGACCGAATGGTTTTCACCATGCGAAAAGCTTGGACTAGCTGCAGAACATGGTTTTTATCTTAGGCCAAATCATACTGCAGATTGGGAGACATGTGTAGCTGTGACCGATTTTGACTGGAAACAGATTGCAGAACCCGTTATGCAATTGTATACCGAGACAACTGATGGCTCTACAATTGAAACTAAAGAGAGTGCGCTTGTTTGGAACTACCTTTATGCGGATCCTGATTTTGGGTCGTGCCAGGCCAAGGAACTTTTAGATCACCTGGAAAGTGTTCTTGCCAATGAGCCAGTTTCTGTCAAGAGTGGCCAACACATTGTAGAAGTTAAACCTCAGGGTGTAAACAAGGGCATTGTAGCAGAATATCTCTTGCAAACAATGAGGGAGAGGGGAATGCTTCCCGATTTCGTTCTATGCATTGGAGACGACAGGTCAGACGAGGACATGTTCGAGGTGATAATGAATGCAAAAGCCACACTTTCTCCTGGTGCCGAAGTGTTCGGTTGCACCGTTGGCCAGAAACCGAGCAAGGCCAGGTATTACTTGGAAGACACACACGAAATCTTGAGAATGTTACAAGGTCTTACCCATGCGTCCGAGCACGCCACTAGAGCTGCTCCGCAGACGACGGCTCGTAGAGTGCGCGCGCGATCAACCTCCTTGCGGGACGGCGTGCGACGGAGGCGCGATTCCGGCGTTCAGTCACGAGCAGCGTCGAATTCTCCGGCGGATCTAGTCAGGCAGCAGCGTGCGATTCTCTCGACGCCACAACCTGCATCCACAACGACGGACAGATTGTCGACGGCGCGAACACCTCCTTGCGTTAGTGGACAACCACTCGCGAACGACCCATTCCTCTTTAGATTCGAAAACTCGCACTTCAAGATTGTGCGTTTGCTTCTCTTGATGGATTCTAGTGTTACTATCGCGACTGTAATTCTCAGTATCAGCTTGATCTTGAGCCGTGTTCTTTACGTTATATATTGGAGTGGTAGACCTCTTCGAAACAAAAGCTTGGGACCTGTTAGTACCCTCATTGTTTTAGGCTCAGGAGGTCACACGGCAGAGATGCTCAATGTGTTGTCTGTGCTGCAGACAGACTTGTTTTCTCCAAGATTCTACATTGCTGCTGCTACCGATAACATGAGTCTTCAAAAAGCTCGTACGTTTGAAAACCAACTGGCTGATAAGATTCTCTGCAATGGCCCTGGTACCTGTATCCCACTATGCGTAATTGCATTCATATTCAAGGTTCTGGGAATTAGATGGTCTTCAATTTTTTATGTTGAAAGCATTGCAAGAGTGAAGAGATTATCCCTAAGTGGCTTGATTTTATACAAGTTATACATGGCTGATCAGTTCTTTGTGCAGTGGCCGCAGCTACAAAGAATATATCCCCGCGCTCACTACGTCGGTTGTCTCATGTAG 3360 45.27 MVSRSYSNLLELASGGCSPTFGLGREKRRLPRVATVAGVLSELDDDSCNSTGSDAPSSVAQDRMIIVGNQLPIRANRDENGDWGFSMDEDSLLLQLKDGLGEDVEVIYIGCLREEVDPREQDDVAQTLLDRFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQNVLNLPETVSKVAELQDRFKGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKAVLVQIANPARGRGKDVQEVVAETTATVDRINTTFRRPGYEPVILINTPLQFYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDDVLGLNPSTAKKSMLVLSEFIGCSPSLSGAIRVNPWNIEAVTEAMDSALVIPEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPDFRKLSVDHIVSVYKRTCHRAILLDYDGIMMLPGSISMNPTSEALGILNNLCKDPKNVVFLVSGKDRKTLTEWFSPCEKLGLAAEHGFYLRPNHTADWETCVAVTDFDWKQIAEPVMQLYTETTDGSTIETKESALVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGIVAEYLLQTMRERGMLPDFVLCIGDDRSDEDMFEVIMNAKATLSPGAEVFGCTVGQKPSKARYYLEDTHEILRMLQGLTHASEHATRAAPQTTARRVRARSTSLRDGVRRRRDSGVQSRAASNSPADLVRQQRAILSTPQPASTTTDRLSTARTPPCVSGQPLANDPFLFRFENSHFKIVRLLLLMDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVSTLIVLGSGGHTAEMLNVLSVLQTDLFSPRFYIAAATDNMSLQKARTFENQLADKILCNGPGTCIPLCVIAFIFKVLGIRWSSIFYVESIARVKRLSLSGLILYKLYMADQFFVQWPQLQRIYPRAHYVGCLM 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17303864 17317497 + Lsi07G011790.1 Lsi07g01179 667601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01179 1119 CDD HAD_TPP 595 831 - -
Lsi07g01179 1119 Pfam Trehalose-phosphatase 597 829 IPR003337 GO:0003824|GO:0005992
Lsi07g01179 1119 TIGRFAM T6PP: trehalose-phosphatase 593 840 IPR003337 GO:0003824|GO:0005992
Lsi07g01179 1119 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 846 IPR001830 GO:0003824|GO:0005992
Lsi07g01179 1119 Gene3D Glycogen Phosphorylase B; 315 531 - -
Lsi07g01179 1119 Gene3D - 593 710 IPR023214 -
Lsi07g01179 1119 Gene3D - 723 854 IPR023214 -
Lsi07g01179 1119 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 596 798 IPR006379 -
Lsi07g01179 1119 Gene3D Glycogen Phosphorylase B; 56 314 - -
Lsi07g01179 1119 Pfam Oligosaccharide biosynthesis protein Alg14 like 989 1039 IPR013969 GO:0006488
Lsi07g01179 1119 Pfam Oligosaccharide biosynthesis protein Alg14 like 1040 1118 IPR013969 GO:0006488
Lsi07g01179 1119 MobiDBLite consensus disorder prediction 860 877 - -
Lsi07g01179 1119 SUPERFAMILY HAD-like 594 839 IPR036412 -
Lsi07g01179 1119 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 846 - -
Lsi07g01179 1119 CDD GT20_TPS 63 546 IPR001830 GO:0003824|GO:0005992
Lsi07g01179 1119 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824|GO:0005992
Lsi07g01179 1119 MobiDBLite consensus disorder prediction 843 917 - -
Lsi07g01179 1119 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 550 - -
Lsi07g01179 1119 MobiDBLite consensus disorder prediction 878 917 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00224 Lsi-Chr1:2036636 Lsi07g01179 Lsi-Chr7:17303864 0 dispersed
Lsi04g00531 Lsi-Chr4:4900865 Lsi07g01179 Lsi-Chr7:17303864 4.52E-73 dispersed
Lsi04g01978 Lsi-Chr4:26807945 Lsi07g01179 Lsi-Chr7:17303864 7.60E-140 dispersed
Lsi07g00172 Lsi-Chr7:1832148 Lsi07g01179 Lsi-Chr7:17303864 7.55E-06 dispersed
Lsi07g01179 Lsi-Chr7:17303864 Lsi11g01716 Lsi-Chr11:25258732 0 dispersed
Lsi07g01179 Lsi-Chr7:17303864 Lsi06g01540 Lsi-Chr6:25744451 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01179 K16055 - csv:101207192 1699.87