Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01180 ATGGAAGAAGAACGTAGATTTTGTATAGGCTATGCTTTGGCTCCCAAGAAACGCCATAGTTTCATCCAAGACTCGTTAGTGAGCCTCGCCGCGTCTCGAGGGATCGATCTTGTTCGAATTGACACTGACCGGCCACTTCTTGATCAAGGCCCATTTGATTGCATTCTCCACAAGTTTTACGGCGAGGATTGGAGGAAGCAACTGGTGGAGTTTAGAGTTAAGAACCCTAATGCTTTCATTTTGGATTCACCGGATTCGATTGAGAGACTTCACAATCGGATTTCGATGCTTCAGGTTGTTTCCGAGTTGAAGATTGATAACCCAGACGAATCGTTTGGGATCCCTAAGCAGATTGTGATTTACGATAAGGAGACTTTGTTTGATCGGCAGGCTTGGGAGGGTTTGAAGTTCCCTGTTATTGCCAAGCCATTAGTGGCTGATGGCAGTGCTAAATCTCACAAAATGGCTCTTGTATTCAACCATGATTGTTTGAACAAGCTTAAGCCTCCGATTGTCTTGCAGGAGTTTGTGAATCATGGGGGTGTTATCTTTAAGGTTTACGTTGTTGGGCAGTATGTGAAATGTGTGAAGAGGAAGTCTCTCCCCGACGAACCCGAAGCGAAATTGGGGAATGTAGATGGATTGTTGTCATTCTCGCAGGTCTCGAATATGACCCCTCGTGAGAAAATTGATGATAAGTACTACAAGATGATGCAGCTTGATGATACAGAGATGCCACCGTTAAGTTTCATCACCGACATCGCGAGAGGGCTGCAACGGTCCATGAACTTGAACCTTTTCAACTTTGACGTCATTCGGGACTCGAAAATTGGGACTCGCTACCTTATAATTGACATTAACTACTTCCCTGGGTATGCCAAAATGCCAGGTTATGAGAAGGTTTTGACGGATTTCTTCTGTGATTTAGCACAGAAGAAAGAGGCATTGAACAATCCTGAAAAGAAGAAGGATGTTGAAGACAAGATTTCTTGTTATCAAGAAACAAGAAAGATTGCCAGTGATGAGGATAGTGGAGGCCAATCAATTGACAGGGAAAAGGAAGAAACCCCTGTTCAAGATTGA 1083 43.86 MEEERRFCIGYALAPKKRHSFIQDSLVSLAASRGIDLVRIDTDRPLLDQGPFDCILHKFYGEDWRKQLVEFRVKNPNAFILDSPDSIERLHNRISMLQVVSELKIDNPDESFGIPKQIVIYDKETLFDRQAWEGLKFPVIAKPLVADGSAKSHKMALVFNHDCLNKLKPPIVLQEFVNHGGVIFKVYVVGQYVKCVKRKSLPDEPEAKLGNVDGLLSFSQVSNMTPREKIDDKYYKMMQLDDTEMPPLSFITDIARGLQRSMNLNLFNFDVIRDSKIGTRYLIIDINYFPGYAKMPGYEKVLTDFFCDLAQKKEALNNPEKKKDVEDKISCYQETRKIASDEDSGGQSIDREKEETPVQD 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17320336 17321418 - Lsi07G011800.1 Lsi07g01180 667602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01180 360 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain 109 307 IPR040464 -
Lsi07g01180 360 Gene3D - 85 291 - -
Lsi07g01180 360 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 1 333 - -
Lsi07g01180 360 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 1 333 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Lsi07g01180 360 MobiDBLite consensus disorder prediction 336 360 - -
Lsi07g01180 360 PIRSF ITPK 1 322 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Lsi07g01180 360 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain 9 87 IPR041429 -
Lsi07g01180 360 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 82 305 - -
Lsi07g01180 360 Coils Coil 322 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01180 K00913 ITPK1; inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase [EC:2.7.1.159 2.7.1.134] - csv:101211366 680.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00680 Lsi-Chr3:8628775 Lsi07g01180 Lsi-Chr7:17320336 3.39E-17 dispersed
Lsi06g00800 Lsi-Chr6:16706472 Lsi07g01180 Lsi-Chr7:17320336 1.77E-21 dispersed
Lsi07g01180 Lsi-Chr7:17320336 Lsi10g00275 Lsi-Chr10:4405454 5.50E-100 dispersed
Lsi07g01180 Lsi-Chr7:17320336 Lsi08g01058 Lsi-Chr8:19202776 1.73E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g692 . Blo03g00058 . . . . Bma07g00920 Bma14g00162 . Cmo16g01222 . . . . Sed02g0062 Cpe14g00971 . Bhi11g00019 Tan01g2207 Cmetu01g2686 . . Mch10g1676 . Cla10g00145 Cam10g0140 Cec10g0150 Cco10g0150 Clacu10g0144 Cmu10g0991 Cre10g0402 . Cone5ag0619 . . Lsi07g01180 . Chy04g00110 Cme06g02458 Blo03g00871 Blo19g00200 Bda07g00088 . Bpe08g00823 Bpe11g00325 . . . . Cmo19g00239 . Cma16g01172 . Car16g01105 . Cpe15g00200 Bhi05g00470 . . Lac11g2433 . . . Cla09g01107 Cam09g1161 Cec09g1169 Cco09g1184 . . Cre09g1122 . Csa03g04592 Chy06g02155 Cme04g00134
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001652 2 8 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 3 2 1 2 2 2 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01180 Lsi_Chr07 FPKM 1.299841 1.870258 2.296297 2.185779 2.867469 1.135003 1.386817 2.569117 1.682323 2.036144