Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01181 ATGGGGAAGAAGAAAACCACCGACCCCAAAATTGCCCCCGAAGAAAGCGCCACTGTTTCTGCTCCGTCCAGCGTTTTCGAGACTCTATTCGGCAGCGCCGGAGTAGAAAACCCCGGCGTTTCTATCTTCTCCAGTGACAATCCATTTCGTAGGAAAGATTCAGATTCCATTCCTGCACCTGCTGAAAAATCTCCTAATGGCAGCTCTGATGGAAAGAGTAGGAAGAAGGGCAGGGAGAAAAGGGTTGGTACTGATTTGGATTCTGCTGAGGAAGGTGTTAAAAGTTCGTCGGAGTTCAAGAAATCGAAGAGGAAGGAGAAGTCGCGGGACCGCGAATTGGATAATGTAGATGGTGATGGAGAAAGGGGTTCTGAATCGCAAGGCGTATTGAAGAAGAATAAGAAGAAAGGTACTGTTTTGGGCTCTGAAACTACAGAAAAGAGTCCTGAATTTGACGGAGAATTGAAGATAGATGAGCAAAGGACTGACAGTAAACTCGGTGAGAATGTGAAATTGATGAAAGATAGGAAGAAGAGGAAGAGAGATGAACTTGAGAGAGAGTATGAAGCGAAAAAGTATGGTGTATCAGAAGTAGCTGAAGATGAAGAGGAAGGTTCAGGGGGGAATGTTGTTGGGAAGAAGAGGAAAGCATTGGACGATCCTTCAGAGATGATGGTTACGAAGGAAGGATTTGATGATGAAAGCAAGCTTTTGAGAACTGTGTTTGTTGGGAACTTGCCATTGAAAGTGAAGAAGAAAGCTTTAGGCAAGGAGTTTAGCCAATTTGGAGAGATAGAATCTGTTAGGATCCGGTCTGTACCAATTGACATTGCGAATAGCAAAAAACCGAGGAAGGGAGCAATCATTTCTAAGAAACTCAATGAAGCTGCGGACAGTTCTCATGCGTACGTCGTTTTTAAAACGGAGGAATCAGCACAGGCTTCTTTGTCCCATAATATGGCTGTGTTTGCAGGAAATCATATACGTGTCGATAGAGCATGCCCACCGCATAAAAAGTTGAAAGTAGGAAATGGGCCAATCTATGATCCCAAGAGAACTGTTTTTGTGGGCAACCTTCCATTTGATGTAAAGGATGAAGAATTGTATCAATTATTTTGCGGAATCGGCAATATGGGATCCAGTGTTGAGGCTATTCGGGTCATTAGAGATCCCAAAGTGAACGTAGGCAAGGGCTTTGCTTATGTCTTCTTTAAGACAAGGGAAGCCGCAAACTCCATAGTTAGTAATCAAAAACTAGAGTTGCGCGGTCGAACGCTGAGGCTCTTTCACACCAAACCAAATCTGACATCGACTCCGCTTAAAAAACGAAATAGGCCACCTACGGAATCTGATCGGACCCCAGCAAAGAAAAATGCAGGGGATTCAGGTTTAAGGACACCAGACAGCAGCAGGAGGATAACGCCGAAAGCGACTGTTGCATCCTATCAGGGCCTGCGTGCGAGCAAAAGCGGTTCCCAGAAAAAGATCCATACCAAAGGCAGTAGCACGAAATGGCTGAAATCACATTCAAACAGCAAAGAGAAGCCTGTAGATCACAAGAGGAAAAGACCAGAGAAGACAAGTGAAAGAAAGGGTAAAAGACCAGCAGTTGCCAACAGAAAGGCTGCAGTGAACGCGACGAAAAATGGCGTTGCAGCGCCGAAACAGGCTGGGGTGAAGCGCAAGTCCGATAGCCGAACTCCAGGGAGCTCTCACAAGAACAAGAGAGTCAAAAGGTTTAGATAG 1746 45.3 MGKKKTTDPKIAPEESATVSAPSSVFETLFGSAGVENPGVSIFSSDNPFRRKDSDSIPAPAEKSPNGSSDGKSRKKGREKRVGTDLDSAEEGVKSSSEFKKSKRKEKSRDRELDNVDGDGERGSESQGVLKKNKKKGTVLGSETTEKSPEFDGELKIDEQRTDSKLGENVKLMKDRKKRKRDELEREYEAKKYGVSEVAEDEEEGSGGNVVGKKRKALDDPSEMMVTKEGFDDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPIDIANSKKPRKGAIISKKLNEAADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRTVFVGNLPFDVKDEELYQLFCGIGNMGSSVEAIRVIRDPKVNVGKGFAYVFFKTREAANSIVSNQKLELRGRTLRLFHTKPNLTSTPLKKRNRPPTESDRTPAKKNAGDSGLRTPDSSRRITPKATVASYQGLRASKSGSQKKIHTKGSSTKWLKSHSNSKEKPVDHKRKRPEKTSERKGKRPAVANRKAAVNATKNGVAAPKQAGVKRKSDSRTPGSSHKNKRVKRFR 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17325604 17329303 - Lsi07G011810.1 Lsi07g01181 667603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01181 581 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 44 579 - -
Lsi07g01181 581 Gene3D - 348 450 IPR012677 -
Lsi07g01181 581 CDD RRM1_RBM34 239 331 IPR034220 -
Lsi07g01181 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 335 IPR000504 GO:0003723
Lsi07g01181 581 SMART rrm1_1 353 429 IPR000504 GO:0003723
Lsi07g01181 581 SMART rrm1_1 240 331 IPR000504 GO:0003723
Lsi07g01181 581 MobiDBLite consensus disorder prediction 463 507 - -
Lsi07g01181 581 SUPERFAMILY RNA-binding domain, RBD 239 346 IPR035979 GO:0003676
Lsi07g01181 581 Coils Coil 167 187 - -
Lsi07g01181 581 MobiDBLite consensus disorder prediction 431 581 - -
Lsi07g01181 581 MobiDBLite consensus disorder prediction 1 216 - -
Lsi07g01181 581 MobiDBLite consensus disorder prediction 508 536 - -
Lsi07g01181 581 SUPERFAMILY RNA-binding domain, RBD 346 446 IPR035979 GO:0003676
Lsi07g01181 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 354 427 IPR000504 GO:0003723
Lsi07g01181 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 273 IPR000504 GO:0003723
Lsi07g01181 581 Gene3D - 236 340 IPR012677 -
Lsi07g01181 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 352 433 IPR000504 GO:0003723
Lsi07g01181 581 PANTHER RNA-BINDING PROTEIN 34 44 579 - -
Lsi07g01181 581 MobiDBLite consensus disorder prediction 444 458 - -
Lsi07g01181 581 MobiDBLite consensus disorder prediction 68 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01181 K14837 NOP12; nucleolar protein 12 - csv:101206555 895.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01181 Lsi-Chr7:17325604 Lsi05g01351 Lsi-Chr5:21375433 3.11E-09 dispersed
Lsi07g01181 Lsi-Chr7:17325604 Lsi07g00660 Lsi-Chr7:7051717 2.17E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g690 . Blo03g00119 Bda06g01271 . . Bpe07g00216 . . . . . . . . Sed13g0485 . . Bhi11g00020 Tan01g2206 Cmetu06g0815 . . Mch10g1675 . Cla10g00146 Cam10g0141 Cec10g0151 Cco10g0151 Clacu10g0145 Cmu10g0992 Cre10g0403 Cone8ag0607 . . . Lsi07g01181 . . Cme06g02459 . . . . . . . Bma12g00215 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00155 Chy06g02154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010480 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01181 Lsi_Chr07 FPKM 4.414878 4.805045 6.032752 4.892828 5.788029 7.108835 7.712961 5.377951 7.011395 7.901861