Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01183 ATGGCGACGCTGGAATCTGCAATTCCAATAATCTCTCAATACATTTCTTCTTCTTCCTCAAAATTATGCTTCAATAAACTTCCCTCCGCCATTAAGCTTCGAATTTCCTTCTCTTCCCCTCTCCTTTCCCTCAATCCCACAACCGCCATTTCCCCTCTCTCCCTCAATCCATCGCGAAATCGCGGCGGCGGCCGACTATGTTCTGCAGTGCAAGAGGTTAGTTTGGAGGAAGCTTCGGAGCAAAATCAGGATGTGAATCAGAAGAAAAAGCTATACATCTTCAATTTACCTTGGTCTTTCTCTGTTGTTGACATTAAGGAGCTCTTTGGACAATGCGGCACTATCACTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCTGAAATTTGACTCTCAAGTAGATATTTGTAAGTTTCCGGATGGAATTGAAGTCACTAGGGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAGGAGATTGAAGAAACCTCCTCCTCCAAAGCCTCCTGGTCCCCCTCCTGGAGAGACGGTGAATAAACTTTATGTATCAAATCTTGCTTGGAAGGTGAGATCCAGCAATCTCAGAGAGTTCTTCTCTGAGAACTTTAACCCAGTTGCAGCCAGGGTTGTCTTTGATAGCCCTTCTGGAAGATCTGCTGGATACGGTTTTGTTTCTTTTGCTACTCGAGAGGAAGCTGAAACTGCACTTTCTTCATTGGAGGGGAAGGAATTGATGGGAAGACCGCTTCGCCTGAAATTCAGTGAAAGAAATGTCAGCGAATCAGAAACCCCAAAAGAAGACATTGTTGAAAGCCAACCTGAAGAATCATAG 894 43.85 MATLESAIPIISQYISSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTAISPLSLNPSRNRGGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTITDVEIIKQKNGRSRGFAFVTMASPDEAQAAILKFDSQVDICKFPDGIEVTREISGRVIKVEFARRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVSESETPKEDIVESQPEES 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17339455 17342343 - Lsi07G011830.1 Lsi07g01183 667605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01183 297 PANTHER OS02G0815200 PROTEIN 6 288 - -
Lsi07g01183 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 277 IPR000504 GO:0003723
Lsi07g01183 297 Gene3D - 57 182 IPR012677 -
Lsi07g01183 297 Gene3D - 183 287 IPR012677 -
Lsi07g01183 297 SUPERFAMILY RNA-binding domain, RBD 170 279 IPR035979 GO:0003676
Lsi07g01183 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 271 IPR000504 GO:0003723
Lsi07g01183 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 151 IPR000504 GO:0003723
Lsi07g01183 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 180 IPR000504 GO:0003723
Lsi07g01183 297 PANTHER CHLOROPLAST, PUTATIVE-RELATED 6 288 - -
Lsi07g01183 297 SUPERFAMILY RNA-binding domain, RBD 80 183 IPR035979 GO:0003676
Lsi07g01183 297 SMART rrm1_1 200 273 IPR000504 GO:0003723
Lsi07g01183 297 SMART rrm1_1 90 165 IPR000504 GO:0003723
Lsi07g01183 297 MobiDBLite consensus disorder prediction 276 291 - -
Lsi07g01183 297 MobiDBLite consensus disorder prediction 276 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01183 - - - csv:101211116 464.151
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02259 Lsi-Chr4:29629395 Lsi07g01183 Lsi-Chr7:17339455 2.20E-30 dispersed
Lsi06g01603 Lsi-Chr6:26406577 Lsi07g01183 Lsi-Chr7:17339455 1.88E-22 dispersed
Lsi07g01183 Lsi-Chr7:17339455 Lsi08g00587 Lsi-Chr8:14135174 8.02E-07 dispersed
Lsi07g01183 Lsi-Chr7:17339455 Lsi02g02602 Lsi-Chr2:32407727 3.03E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g678 . . . . . . . . . Cmo16g01221 . . . . Sed02g0123 Cpe14g00970 . Bhi11g00026 Tan01g2201 Cmetu06g1790 . . Mch10g1673 . Cla10g00148 Cam10g0144 Cec10g0153 Cco10g0153 Clacu10g0147 Cmu10g0994 Cre10g0405 . . . . Lsi07g01183 . . Cme06g02461 Blo03g00866 . . . Bpe08g00829 . . . . . . . Cma16g01171 . Car16g01104 . . . . . . . . . . . . . . . . . Csa03g00157 Chy06g02152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012628 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01183 Lsi_Chr07 FPKM 53.547298 55.469173 245.793823 239.689896 29.400425 33.0457 33.60976 62.091801 59.554058 57.559055