Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01196 ATGGCGACCCATTTGGTGGATTCTCAAGAAGTTGATCGATTTTTGGTTCCTCCGTTGGGAATTGAAGGTGGGTCTTGGCCCTCGACTACTACTGAAGATGCCCTAACTCAACAATCTCTGGTTCCGCCTTCGTCTTGCCGTAATGGGAATTTTTCTTTTTCGACTATGGACGCCTCTGCTAATCAGTCTTGGGGTCCTTCGATAAACCCTACTGGGTCTTCGTCATTTTCAACTTACTCGTCTGATTCTGATGGACTTGAGCCATTGCCTTCTTTGCCGGGATCGTCTTTGAAGTGGTCTTCTTCAGAGGAACCTTTTCCAGCAAGTTCAGTGTCTGCCCAAGAAACCGAATCTTTATCAGCAGGTGCGGGGCTTGCGAATTTGGGCAATACTTGTTTTATAAACGCAATCCTGCAGTGCCTTACTCATACTGCTCCATTTGTGGAGGGTCTTCGATCTGCCAATCATGATATGCCTTGTAACAGTGAAGATTTTTGTGTTCTGTGTGCAATTCGAGATCATATCGAGCTCTCGTTAACTTCTCTGGCATTAGACTTCTCGTCTTTTTTCCGGAGATACCAGCAGGAGGATGCCCATGAGTTCATGCAGTGTTTCTTGGATAAACTTGAAAGATGCCTGGTTTCAGAAGCAAAGGATCGGGATTCTTCTGAGGATGATGATCTAGTGAATAAGGTGTTTGGTGGTCGTCTCATGAGCAATCTATGCTGCTGTAATTGTGGCCATTGTTCCGAAACGCACGAGCCTTTGGTTGACCTGAGTTTGGAGATTGAGAATGTAGACTCCCTTTCTAGTGCTCTGGAGTCTTTCACCAAGGTGGAGAGGATTGGTGATCCAGAGACGAAATTTAAGTGTGAAAACTGCAAAGAAGAGGTGTTGGTGGAGAAGCAGCTTAAACTGGAAAAAATCCCTTTGGTTACTACATTCCACTTAAAGAGATTCAAGGCTGATAGTTCTTTTGTTGAGAAAATTGAAAAGCACTTGGACTTTCCACTAGAGTTAGATTTGCAGCCGTACACCCTGGGAGTCCAGGATGCAGAGGTGGAGCTCAAGTATGAATTATATGCCATTGTGGAACACACAGGGTTTTCTTCTACTTCTGGGCATTACTTCAGCTTTGTTCGCTCCTCTCCTGATACGTGGCACAGAATGGATGACTCATTGGTTACTCTGGTCACCGAAGATTATGTGCTGTCACGTGAGGCCTACATCCTGTTATATAAGAAGAAGGGGACTTCATGGTTCTCAAGTTTAATCCAACGACCAGATCCTTGCTTGAAATCAGATTCCTCAAATCCATCACCGAAGTCAGTTTTGCAAAATATTGATGCTGTTCGCTCTTCATTTGCTACTGAGTCTAATGTCAATTGTGAAACTACGAATGCACCGGCTGATACTTTGCGCCCAAGTCCTCCTCGGTTTTCTTGTGAAATGAGGAATCAAGATACTGGTACCAATGATTTAAAAAATGCTACCTCTGCTAACTTGAATATATTTGAGAGTGCGACCACAAAGTCTTCTCCCATTGTAACTAATAACCTCTGTTTGAATGGCGAAGATGAAAGTATTGATGGTTTTCATCCTCTATCGCCAATGAGATCTCCTAGCCCCGATAATAGTTTCCAGACCCCAGAACCACAATACCGAATACCAGCCGATCACCTGAAGACGGAAAAGTGCTCGACATCTGGACGGTCATTGAATAAAGGTGTGGAAGATTCTGAAAGAAAAGCAGCCCTGAGGTACATTAAGAAGAGCATGCCAGAGATTGGAAATGAAGCCATGGGAGACGATACGCCAACCCCAACTCCGACGAGCTCATCATCGGAGGCTGCAAGTAGACATGTAGTGGTCGTCATGGATGGAATGGAAGAGTTCACGACGGAGCCACTCAAATGGGCGTTGGAGAATGTCATTATGCCTGGTTGCGTCGTTACTCTCATCGGTGCAATGCCATGGCTCAACATTCCTCGTTAG 1995 44.96 MATHLVDSQEVDRFLVPPLGIEGGSWPSTTTEDALTQQSLVPPSSCRNGNFSFSTMDASANQSWGPSINPTGSSSFSTYSSDSDGLEPLPSLPGSSLKWSSSEEPFPASSVSAQETESLSAGAGLANLGNTCFINAILQCLTHTAPFVEGLRSANHDMPCNSEDFCVLCAIRDHIELSLTSLALDFSSFFRRYQQEDAHEFMQCFLDKLERCLVSEAKDRDSSEDDDLVNKVFGGRLMSNLCCCNCGHCSETHEPLVDLSLEIENVDSLSSALESFTKVERIGDPETKFKCENCKEEVLVEKQLKLEKIPLVTTFHLKRFKADSSFVEKIEKHLDFPLELDLQPYTLGVQDAEVELKYELYAIVEHTGFSSTSGHYFSFVRSSPDTWHRMDDSLVTLVTEDYVLSREAYILLYKKKGTSWFSSLIQRPDPCLKSDSSNPSPKSVLQNIDAVRSSFATESNVNCETTNAPADTLRPSPPRFSCEMRNQDTGTNDLKNATSANLNIFESATTKSSPIVTNNLCLNGEDESIDGFHPLSPMRSPSPDNSFQTPEPQYRIPADHLKTEKCSTSGRSLNKGVEDSERKAALRYIKKSMPEIGNEAMGDDTPTPTPTSSSSEAASRHVVVVMDGMEEFTTEPLKWALENVIMPGCVVTLIGAMPWLNIPR 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17453172 17457670 - Lsi07G011960.1 Lsi07g01196 667618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01196 664 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 123 416 IPR028889 -
Lsi07g01196 664 Pfam Ubiquitin carboxyl-terminal hydrolase 124 413 IPR001394 GO:0004843|GO:0016579
Lsi07g01196 664 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 358 376 IPR018200 GO:0004843|GO:0006511
Lsi07g01196 664 SUPERFAMILY Cysteine proteinases 123 415 IPR038765 -
Lsi07g01196 664 MobiDBLite consensus disorder prediction 1 47 - -
Lsi07g01196 664 MobiDBLite consensus disorder prediction 604 618 - -
Lsi07g01196 664 MobiDBLite consensus disorder prediction 24 47 - -
Lsi07g01196 664 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 124 139 IPR018200 GO:0004843|GO:0006511
Lsi07g01196 664 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 112 444 - -
Lsi07g01196 664 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 112 444 - -
Lsi07g01196 664 MobiDBLite consensus disorder prediction 596 618 - -
Lsi07g01196 664 Gene3D Cysteine proteinases 120 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01196 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - csv:101210383 1013.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02951 Lsi-Chr2:35650709 Lsi07g01196 Lsi-Chr7:17453172 1.45E-11 dispersed
Lsi04g00811 Lsi-Chr4:7690848 Lsi07g01196 Lsi-Chr7:17453172 2.14E-25 dispersed
Lsi07g01196 Lsi-Chr7:17453172 Lsi11g00675 Lsi-Chr11:7112378 2.00E-68 dispersed
Lsi10g00960 Lsi-Chr10:13947720 Lsi07g01196 Lsi-Chr7:17453172 2.79E-21 dispersed
Lsi07g01196 Lsi-Chr7:17453172 Lsi08g01030 Lsi-Chr8:18894967 4.32E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g673 . . . . . . . Bma14g00154 . Cmo16g01210 . . . . Sed02g0114 Cpe14g00962 . Bhi11g00158 Tan01g2190 Cmetu06g2228 . . Mch10g1656 . Cla10g00157 Cam10g0157 Cec10g0167 Cco10g0166 Clacu10g0159 Cmu10g1008 Cre10g0418 Cone8ag0473 Cone12ag0467 . . Lsi07g01196 . . Cme06g02471 Blo03g00860 . Bda07g00098 . . Bpe11g00335 . . . . . . Cma16g01159 . Car16g01099 . . . . . . . . . . . . . . . . . Csa03g00168 Chy06g02145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003716 1 3 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 2 1 1 2 2 2 2 1 1 1 4 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01196 Lsi_Chr07 FPKM 3.66862 3.937651 4.852193 5.117676 4.078237 4.48496 4.514291 3.321312 2.553588 2.2116