Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01198 ATGACGGATTATCGTTTGTCGACGATGAATCTCTGGACCGACGAGAACGCGTCGGTGATGGACGCTTTCATGAACTCCGATCTGTCTTCTTACTGGGCTCCATCAGCCGCATCGTCTCATTCTCTTCACCACCCACCGCCGCCCCAGTCCTCCGCCTCCACATCCACTCCTCCGCCGGACCCGCCCAAGTCCCTTCCTGTTTTCAATCAGGAGACTCTGCAGCAGCGGCTCCAGGCGCTGATCGATGGCGCTAGAGAGAGTTGGACTTACGCGATTTTCTGGCAGTCGTCGTATGATTATTCCGGTGCGTCTGTTTTGGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGAAAAAAGAAAATAGTTTCGTCAGCGGCAGAGCAGGCTCACCGGAAGAAGGTTTTACGGGAGCTTAACTCTTTGATTTCTGGCTCCGCCGCCGGACCGGACGATGCTGTGGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTGTTAATGGAGTTGGGTTACCGAGTCAGGCGTTTTACAACTCGACGCCGATTTGGGTCTCTGGCGCCGATCGGCTGTCAGCGTCTGCCTGTGAACGGGCCAGACAGGGGAGGCTTTTTGGGTTACAGACGATGGTCTGTATTCCATCGCCAAACGGAGTTGTGGAAATGGGTTCGACGGAATTGATTCATCGAACGTCGGATTTGATGAACAAAGTCAAGATTTTGTTCAATTTCAACAATCTCGAAACCAGTTCTTGGATATCGGGAACCACCGCCGCCGACGAAGGGGAAAACGACCCGTCGTCGATGTGGATCAGCGAGCCGTCGAGTACAATCGAGATGAAGGATTCGATTACCACCACCGTCCCTTCCGGCACCGTTCCGGCAAAGCCAATCCATTCAGAAAATCCCAGTTCCAGCAGCTTAACGGAAAATATCAGCACGATTCAACAACAATCCCATCAAAAACAGAGCCAAAGCTTCTTAAATTTCTCCGATTACGGCTTCGAATCAAATCCCTCAAAGAACACCACCGCCGCCGCAACAGCCACCACCACCACCACCACCCCATCATTCAAGCCGGAATCCGGCGGGATGCTGAATTTCGGCAACGGAAGCCTCTTCTCCGGCCACTCACAGTACGTAACAAACGAACAGAACGAGAAAAAGAGATCCCCTGCTTCTCGGAGCAGCAACGACGAAGGGATCCTCTCTTTCACCTCCGGCGTGATCTTACCCTCCTCCGGTAAGGTAAAATCCGGCGACTCGGACCACTCAGATCTCGAAGCATCGGTGATCAGAGAAGTGGATAGCTGTACAAAATCATTAGAACCCGAAAAACGTCCAAGAAAAAGAGGTCGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCACGTAGAAGCAGAGAGACAACGGCGAGAGAAATTGAACCAGAAATTCTATGCTCTCCGAGCTGTAGTTCCAAACGTATCTAAAATGGACAAGGCCTCACTACTCGGCGACGCGGTTTCGTACATCAACGAGCTGAAATCGAAGCTCCAAATTGCGGAATCGGAGAAAACAGAGATGGGGAAACATTTAGAATTGTTAAAGAAGGAGGTGGGAGAGAAAGATTTCGGGAATTACCCGAACCCAAATGATGAAGATCTGAAAATAGGGAAGAGAAAGGTAATGGATTTGGAGATCGAAGTTAAAATAATGGGTTGGGATGCGATGATAAGGATTCAAAGCAGCAAGAAGAATCATCCGGCAGCAAGGCTGATGACGGCGTTTAAGGATTTGGATTTAGAAATGCTTCATGCGAGTGTTTCTGTAGTGAATGATTTAATGATTCAACAAGCAACGGTGAAGATGGGGAGCAGATTTTACACACAGGAGCAGCTTAAAATGGCTCTCGTCGCCCGAGTCGGTGGCGGCGGCGGCGGCGGCAGCCACGGAATGATGTAA 1980 50.35 MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLPVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGASVLGWGDGYYKGEEDKGKGKKKIVSSAAEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFYNSTPIWVSGADRLSASACERARQGRLFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAADEGENDPSSMWISEPSSTIEMKDSITTTVPSGTVPAKPIHSENPSSSSLTENISTIQQQSHQKQSQSFLNFSDYGFESNPSKNTTAAATATTTTTTPSFKPESGGMLNFGNGSLFSGHSQYVTNEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSLEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIAESEKTEMGKHLELLKKEVGEKDFGNYPNPNDEDLKIGKRKVMDLEIEVKIMGWDAMIRIQSSKKNHPAARLMTAFKDLDLEMLHASVSVVNDLMIQQATVKMGSRFYTQEQLKMALVARVGGGGGGGSHGMM 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17487021 17489000 + Lsi07G011980.1 Lsi07g01198 667620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01198 659 MobiDBLite consensus disorder prediction 36 67 - -
Lsi07g01198 659 MobiDBLite consensus disorder prediction 50 65 - -
Lsi07g01198 659 CDD bHLH_AtAIB_like 468 544 - -
Lsi07g01198 659 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 73 253 IPR025610 -
Lsi07g01198 659 MobiDBLite consensus disorder prediction 424 481 - -
Lsi07g01198 659 Pfam Helix-loop-helix DNA-binding domain 475 520 IPR011598 GO:0046983
Lsi07g01198 659 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 471 520 IPR011598 GO:0046983
Lsi07g01198 659 MobiDBLite consensus disorder prediction 430 481 - -
Lsi07g01198 659 Gene3D - 463 549 IPR036638 GO:0046983
Lsi07g01198 659 Coils Coil 517 544 - -
Lsi07g01198 659 MobiDBLite consensus disorder prediction 393 412 - -
Lsi07g01198 659 MobiDBLite consensus disorder prediction 297 334 - -
Lsi07g01198 659 PANTHER MYC 11 647 IPR045084 GO:0003700|GO:0006355
Lsi07g01198 659 MobiDBLite consensus disorder prediction 350 372 - -
Lsi07g01198 659 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 474 541 IPR036638 GO:0046983
Lsi07g01198 659 SMART finulus 477 526 IPR011598 GO:0046983
Lsi07g01198 659 MobiDBLite consensus disorder prediction 350 382 - -
Lsi07g01198 659 PANTHER TRANSCRIPTION FACTOR MYC2 11 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02130 Lsi-Chr5:28132824 Lsi07g01198 Lsi-Chr7:17487021 1.00E-25 dispersed
Lsi06g01209 Lsi-Chr6:22450517 Lsi07g01198 Lsi-Chr7:17487021 6.95E-15 dispersed
Lsi07g01198 Lsi-Chr7:17487021 Lsi09g01653 Lsi-Chr9:24845081 1.68E-25 dispersed
Lsi09g01263 Lsi-Chr9:20303550 Lsi07g01198 Lsi-Chr7:17487021 4.07E-06 dispersed
Lsi11g00185 Lsi-Chr11:1912716 Lsi07g01198 Lsi-Chr7:17487021 2.35E-10 dispersed
Lsi11g00523 Lsi-Chr11:5508378 Lsi07g01198 Lsi-Chr7:17487021 1.53E-09 dispersed
Lsi07g01198 Lsi-Chr7:17487021 Lsi05g01835 Lsi-Chr5:25630566 9.13E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25674 PF14215 bHLH-MYC_N 5.20E-53 CL0161 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01198 K13422 - csv:101205372 1095.88