Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01202 ATGGGTGACGTGGCCAAGGACCTCACTGCCGGGACTGTCGGAGGGGCAGCGCAGTTGATATGTGGACACCCATTCGATACTATAAAGGTCAAGCTGCAAAGCCAACCTGTTCCACTTCCTGGCCAGCGTCCCAAATTCTCTGGCGCCATGGATGCTGTCAAGCAAACTATAGCAGCTGAAGGCCCTCGGGGGTTGTACAAGGGTATGGGAGCTCCACTCGCAACCGTCGCAGCCTTCAATGCCGTTCTCTTTTCAGTAAGAGGACAAATGGAAACATTGTTAAGGTCTCAACCTGGTGTACCCCTAACTGTCAATCAGCAAGTGGTTTGTGGAGCTGGGGCCGGACTTGCTGTGTCCTTTCTCGCTTGCCCTACTGAATTAATCAAGTGCAGATTGCAAGCTCAAAGTGCATTGGCACAATCCAGTTCAGCCGGCCTAACAGTTAAGTATGGGGGGCCAATGGATGTTGCTCGGCACGTTCTCAAGTCGGAAGGCGGTGCAAGGGGTCTCTTCAAGGGACTGGTTCCTACCCTAGCCCGTGAAGTACCCGGAAATGCTGCCATGTTTGGTGTGTATGAGTTGCTGAAGCAACAGTTTGCAGGTGGTCCGGACACTTCAAACCTTGGAAGAGGCTCACTGATCGTGGCTGGAGGATTGGCTGGAGGTACCTTCTGGTTCTCCGTCTACCCAACTGATGTTGTCAAGAGTGTACTTCAAGTAGACGATTACAAAAACCCGAAGTACTCGGGTTCCATCGATGCATTTAGAAAGATCCTAAAGTCGGAAGGAGTTAAAGGGCTATACAAAGGATTTGGTCCTGCCATGGCCAGAAGTGTACCTGCAAATGCAGCTTGTTTCCTGGCTTATGAGATCACCAGATCAAGCTTGGGATGA 894 51.23 MGDVAKDLTAGTVGGAAQLICGHPFDTIKVKLQSQPVPLPGQRPKFSGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNAVLFSVRGQMETLLRSQPGVPLTVNQQVVCGAGAGLAVSFLACPTELIKCRLQAQSALAQSSSAGLTVKYGGPMDVARHVLKSEGGARGLFKGLVPTLAREVPGNAAMFGVYELLKQQFAGGPDTSNLGRGSLIVAGGLAGGTFWFSVYPTDVVKSVLQVDDYKNPKYSGSIDAFRKILKSEGVKGLYKGFGPAMARSVPANAACFLAYEITRSSLG 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17509569 17513464 - Lsi07G012020.1 Lsi07g01202 667624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01202 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 93 IPR018108 -
Lsi07g01202 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 102 198 IPR018108 -
Lsi07g01202 297 Pfam Mitochondrial carrier protein 103 199 IPR018108 -
Lsi07g01202 297 Pfam Mitochondrial carrier protein 4 95 IPR018108 -
Lsi07g01202 297 Pfam Mitochondrial carrier protein 214 295 IPR018108 -
Lsi07g01202 297 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 297 - -
Lsi07g01202 297 PANTHER MITOCHONDRIAL CARRIER PROTEIN 1 297 - -
Lsi07g01202 297 Gene3D Mitochondrial carrier domain 2 100 IPR023395 -
Lsi07g01202 297 Gene3D Mitochondrial carrier domain 101 297 IPR023395 -
Lsi07g01202 297 SUPERFAMILY Mitochondrial carrier 3 290 IPR023395 -
Lsi07g01202 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 295 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01202 K15109 SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29 - csv:101204488 568.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00770 Lsi-Chr2:7087605 Lsi07g01202 Lsi-Chr7:17509569 5.15E-38 dispersed
Lsi07g00504 Lsi-Chr7:5298802 Lsi07g01202 Lsi-Chr7:17509569 9.73E-50 dispersed
Lsi07g01202 Lsi-Chr7:17509569 Lsi05g02083 Lsi-Chr5:27707662 1.00E-24 dispersed
Lsi07g01202 Lsi-Chr7:17509569 Lsi02g02791 Lsi-Chr2:34149266 5.13E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g666 Blo02g00995 . . Bda08g00627 Bpe05g00531 . . . Cmo06g00661 Cmo16g01204 Cma02g01610 . Car02g01369 . Sed08g2255 Cpe14g00957 Cpe05g00181 Bhi11g00152 Tan01g2183 Cmetu12g1582 . . . . Cla10g00163 Cam10g0164 Cec10g0174 Cco10g0173 Clacu10g0165 Cmu10g1014 Cre10g0424 . . . . Lsi07g01202 . Chy04g00087 Cme06g02477 . . . . . . Bma05g00714 Bma12g00205 Sed01g4104 Cmo02g01653 Cmo19g00255 Cma06g00653 Cma16g01153 Car06g00583 Car16g01093 . Cpe15g00218 Bhi05g00507 Tan07g1971 Cmetu04g3079 Lac11g2408 Hepe06g1025 . Lcy12g1942 Cla09g01136 Cam09g1193 Cec09g1207 Cco09g1228 . . Cre09g1153 . Csa03g04616 Chy06g02139 Cme04g00111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000849 2 6 2 4 2 4 4 2 4 1 2 4 4 4 4 4 4 2 4 4 2 2 2 2 2 1 2 5 4 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01202 Lsi_Chr07 FPKM 9.964264 9.894073 18.23023 17.07128 8.818551 8.816796 8.890112 28.562582 30.554029 31.218027