Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01210 ATGGCTGGATTGGATTTAGGGAGTCGATATCTAACTCACCTTCAAACGCCAGTAGACGATCTAGTAAATCGTAGTGGTCATTTCTCTTCTGGTGACCACCAAGACGACGATGACGATCCCCATCAAGCCCTTGGTGGCCCGGGGGACATCGTTGGCCGTCGCCCACGCGGTCGGCCACCCGGTTCGAAAAACAAGCCTAAGCCACCAGTAATCATCACCCGTGAGAGCGCCAACACGCTACGTGTCCACATCTTAGAAGTTGGCAGCGGTTGCGACGTTTTCGAGTGCGTCGCTGCCTACGCCCGCCGACGACAACGTGGGATCTGTATTTTGAGTGGTAGCGGTAACGTCACCAACGTCGGCCTCCGCCAGCCAGCAGCGGCAGGGGCAGTGCTGACTCTTCAAGGGAGGTTTGAAATTTTGTCGCTTTCGGGATCGTTTCTACCACCGCCCGCTCCACCGGGCGCCACGAGTTTGACGATATTTTTAGCCGGAGGGCAAGGGCAGGTGGTGGGAGGGACGGTGGCCGGGGAATTAACGGCGGCTGGGCCAGTGATTTTGATTGCAGCTTCATTTACTAATGTGGCGTATGAGAGACTGCCATTGGATGAGGAGGATCAGCAGCAAGCTCCGGCAGGCGGCGGCGGGAGCGGCGGTGGAGTGGGTAACAACAATCCATTTCAAGACCCATCAAATTCAGGGCTTCCATTCTTGAATTTGCCACTTCATATGCAAAATGTTCAACTTCCACCCTTCTGA 759 55.47 MAGLDLGSRYLTHLQTPVDDLVNRSGHFSSGDHQDDDDDPHQALGGPGDIVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDVFECVAAYARRRQRGICILSGSGNVTNVGLRQPAAAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQAPAGGGGSGGGVGNNNPFQDPSNSGLPFLNLPLHMQNVQLPPF 252
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 17634644 17635402 - Lsi07G012100.1 Lsi07g01210 667632
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01210 252 MobiDBLite consensus disorder prediction 21 71 - -
Lsi07g01210 252 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 250 - -
Lsi07g01210 252 MobiDBLite consensus disorder prediction 29 43 - -
Lsi07g01210 252 MobiDBLite consensus disorder prediction 207 235 - -
Lsi07g01210 252 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 194 IPR005175 -
Lsi07g01210 252 CDD DUF296 81 192 IPR005175 -
Lsi07g01210 252 MobiDBLite consensus disorder prediction 221 235 - -
Lsi07g01210 252 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 250 IPR014476 GO:0003680
Lsi07g01210 252 ProSiteProfiles PPC domain profile profile. 77 213 IPR005175 -
Lsi07g01210 252 Gene3D - 80 209 - -
Lsi07g01210 252 SUPERFAMILY AF0104/ALDC/Ptd012-like 77 207 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01210 Lsi-Chr7:17634644 Lsi09g01874 Lsi-Chr9:27553548 1.07E-91 dispersed
Lsi05g01920 Lsi-Chr5:26394918 Lsi07g01210 Lsi-Chr7:17634644 5.69E-81 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01210 - - csv:101210132 392.119