Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi07g01210 | ATGGCTGGATTGGATTTAGGGAGTCGATATCTAACTCACCTTCAAACGCCAGTAGACGATCTAGTAAATCGTAGTGGTCATTTCTCTTCTGGTGACCACCAAGACGACGATGACGATCCCCATCAAGCCCTTGGTGGCCCGGGGGACATCGTTGGCCGTCGCCCACGCGGTCGGCCACCCGGTTCGAAAAACAAGCCTAAGCCACCAGTAATCATCACCCGTGAGAGCGCCAACACGCTACGTGTCCACATCTTAGAAGTTGGCAGCGGTTGCGACGTTTTCGAGTGCGTCGCTGCCTACGCCCGCCGACGACAACGTGGGATCTGTATTTTGAGTGGTAGCGGTAACGTCACCAACGTCGGCCTCCGCCAGCCAGCAGCGGCAGGGGCAGTGCTGACTCTTCAAGGGAGGTTTGAAATTTTGTCGCTTTCGGGATCGTTTCTACCACCGCCCGCTCCACCGGGCGCCACGAGTTTGACGATATTTTTAGCCGGAGGGCAAGGGCAGGTGGTGGGAGGGACGGTGGCCGGGGAATTAACGGCGGCTGGGCCAGTGATTTTGATTGCAGCTTCATTTACTAATGTGGCGTATGAGAGACTGCCATTGGATGAGGAGGATCAGCAGCAAGCTCCGGCAGGCGGCGGCGGGAGCGGCGGTGGAGTGGGTAACAACAATCCATTTCAAGACCCATCAAATTCAGGGCTTCCATTCTTGAATTTGCCACTTCATATGCAAAATGTTCAACTTCCACCCTTCTGA | 759 | 55.47 | MAGLDLGSRYLTHLQTPVDDLVNRSGHFSSGDHQDDDDDPHQALGGPGDIVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDVFECVAAYARRRQRGICILSGSGNVTNVGLRQPAAAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQAPAGGGGSGGGVGNNNPFQDPSNSGLPFLNLPLHMQNVQLPPF | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 17634644 | 17635402 | - | Lsi07G012100.1 | Lsi07g01210 | 667632 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi07g01210 | 252 | MobiDBLite | consensus disorder prediction | 21 | 71 | - | - | |
| Lsi07g01210 | 252 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN | 1 | 250 | - | - | |
| Lsi07g01210 | 252 | MobiDBLite | consensus disorder prediction | 29 | 43 | - | - | |
| Lsi07g01210 | 252 | MobiDBLite | consensus disorder prediction | 207 | 235 | - | - | |
| Lsi07g01210 | 252 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 81 | 194 | IPR005175 | - | |
| Lsi07g01210 | 252 | CDD | DUF296 | 81 | 192 | IPR005175 | - | |
| Lsi07g01210 | 252 | MobiDBLite | consensus disorder prediction | 221 | 235 | - | - | |
| Lsi07g01210 | 252 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 1 | 250 | IPR014476 | GO:0003680 | |
| Lsi07g01210 | 252 | ProSiteProfiles | PPC domain profile profile. | 77 | 213 | IPR005175 | - | |
| Lsi07g01210 | 252 | Gene3D | - | 80 | 209 | - | - | |
| Lsi07g01210 | 252 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 77 | 207 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi07g01210 | Lsi-Chr7:17634644 | Lsi09g01874 | Lsi-Chr9:27553548 | 1.07E-91 | dispersed | |
| Lsi05g01920 | Lsi-Chr5:26394918 | Lsi07g01210 | Lsi-Chr7:17634644 | 5.69E-81 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi07g01210 | - | - | csv:101210132 | 392.119 |