Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01218 ATGGGAAGCGGAGTCTCCAGTCTCTTCTCGTGCCTCAAGCCGGAGACTCGCCCCGCCGCCCTTCCCGCCGACAATTCCGACATCCTCTTCTCCGCCTCCGAGCCACTTGACGAAACCCTAGGCCATTCCTTCTGCTACGTCCGCTCTTCCAACCGTTTCCTCTCTCCTTCTCATTCCGATCGCTTTCTTTCCCCTTCTCAGTCTCTTCGTTTTTCCCCTCCTCACGAACCGTCACTCGGTTCTAGGACTAGAACTGGCCCGCCGGAGACTGCCTTCAAGGCTATCTCTGGCGCTTCTGTCAGTGCCAATAGTTCTATTCCCAGATCTGTTCTTATGCTCGATGCTGTTTATGACGATGCCACTGACACTACGCTTGGGGCTTCTGGTGGTGGTTGTGGAGTCAGAGGGAGTATTTTGAATGGCTTTGAGAGTACTTCTTCTTTTACTGCTCTTCCGCTTCAGCCCGTCCCCAGAGGTGGGACTGAGCCTTTGGAACGAGGTGGGTTCTTTCTCTCTGGTCCAATTGAGCGTGGGGCGCTGTCTGGTCCGCTTGATGCTAATGTTGATGGTGCTGGTGCTGGTGGTGCCGGCGCCGGCGCTGGTGGTGGCAGTGGCGGTGGTGGGAGAGTCCATTTCTCCGCTCCGCTTGGTGGGATGTACGTGAAGAAGAAGAGGAAGAAGAGCATTTCGGGGTTTAGGAAGGCGTTTACGAGGAATTTTTCAGATAAACGGCCGTGGGTGGTACCGGTGTTGAATTTCGTTGGCCGGAAGGAGAGCTCGACGGCGGGAGATGAGCCGGAGGTGAGGAATGAGAGTGATGTTCAATGGGCGCTTGGGAAGGCTGGGGAGGATCGGGTACATGTGGTTGTATCGGAAGAGCAAGGGTGGTTGTTCGTTGGAATTTATGATGGGTTCAATGGCCCTGATGCGCCTGAATTCTTGATGGGTAATCTCTACAGAGCTGTCTTCAATGAGCTTCAGGGATTGTTTTGGGAAATTGACGATAATGAGGAGGCTCCTGCTGCTGCTGCTAATTTGAACCCTTCGAATGTGGCTGAAGATACCACAGTCGGTGTGAATGAAACTAATGCTGACCCGTCCTCAAGAGCCGCTGGTCAAACCGTTGAAACTAACGGGAATGTTTCAGTAGTTGGAAATGAAGCGGAAGTGGAACAACCGGCTGCTGATCGAGGATCAGCTAAGAGGGTTACGTTTCAATCCGAGGATGTACCTGAGAACAGGCGGCGGCGGCGGCTGTGGGAGTATTTAGCGGAGGACGATACACAGGACGGACTTGATCTTTCGGGTTCAGATAGATTTGCATTTTCTGTTGATGACGCTCTTAGTGTAAATAGTGCAGGTTCAGTAGCTGGTAGAAGGTGGTTGTTATTGTCCAAGTTAAAACAAGGGTTGTCAAAGCATAAGGAGGGTCATGTTAAGACTTTGTTCCCGTGGAAGTATGGTTTGGGAGATAAAGAGAAGGCTGAGGCTGAGAATAGGGTGGAGGAGACATCATATCGAAGTGGTAAGAGGAGAAAGGAAGGTTTAATTGATCATGAGTTGGTGTTGGGGGCATTGTCACGTGCTCTTGAGATAACTGAATTAGCATATTTGGACATGACAGATAAGTTGCTTGATACGAATCCAGAGCTTGCTTTGATGGGTTCTTGCTTGCTGGTTGTGTTAATGAGGGATGAAGATGTGTATGTAATGAATCTGGGTGACAGCCGTGCCATTGTAGCACAGTATGAGCAACAAGAAGTTGGTCCTAGTGAAGACATGAAGGAGGAGGGCCTCAAAAGAACGGGCATGGAGGGTATAATTGAGGAGTCTACAGCGAGTGAAGGGAAAATAACTCAAACAAATCAACCTTCAGCTCAGACGATGAGATTGACTGCATTGCAGCTGTCCACTGATCATAGCACGAGCATTGAAGAAGAAGTAAGAAGAATAAAGAATGAGCACCCTGATGACAAACTGTGCATTGTCAATGATAGAGTGAAGGGCCGTCTAAAGGTTACAAGGGCATTTGGTGCAGGATTTTTGAAACAGCCAAAATTGAATGATGCATTACTGGAAATGTTTCGGAATGAGTATATTGGTACCGCACCATATTTATCATGCTTGCCTTCTCTTCGACACCATAGACTCTGCCCTACGGATCAATTCATAGTGCTCTCATCTGATGGGTTGTATCAATATCTAACCAATGAAGAAGTGGTTTCTTATGTTGAGAACTTTATGGAGAAGTTTCCGGATGGAGACCCTGCACAGCACTTGATAGAGGAGCTTCTTTGCCGTGCAGCCAGAAAAGCAGGAATGGATTTTCATGAATTGTTGGACATCCCACAGGGGGATCGAAGAAAGTATCATGATGATGTTACTGTTATGGTCATTTCACTTGAAGGAAGAATCTGGAAATCCTCGGGAAAATATCTTTGA 2442 48.53 MGSGVSSLFSCLKPETRPAALPADNSDILFSASEPLDETLGHSFCYVRSSNRFLSPSHSDRFLSPSQSLRFSPPHEPSLGSRTRTGPPETAFKAISGASVSANSSIPRSVLMLDAVYDDATDTTLGASGGGCGVRGSILNGFESTSSFTALPLQPVPRGGTEPLERGGFFLSGPIERGALSGPLDANVDGAGAGGAGAGAGGGSGGGGRVHFSAPLGGMYVKKKRKKSISGFRKAFTRNFSDKRPWVVPVLNFVGRKESSTAGDEPEVRNESDVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGNLYRAVFNELQGLFWEIDDNEEAPAAAANLNPSNVAEDTTVGVNETNADPSSRAAGQTVETNGNVSVVGNEAEVEQPAADRGSAKRVTFQSEDVPENRRRRRLWEYLAEDDTQDGLDLSGSDRFAFSVDDALSVNSAGSVAGRRWLLLSKLKQGLSKHKEGHVKTLFPWKYGLGDKEKAEAENRVEETSYRSGKRRKEGLIDHELVLGALSRALEITELAYLDMTDKLLDTNPELALMGSCLLVVLMRDEDVYVMNLGDSRAIVAQYEQQEVGPSEDMKEEGLKRTGMEGIIEESTASEGKITQTNQPSAQTMRLTALQLSTDHSTSIEEEVRRIKNEHPDDKLCIVNDRVKGRLKVTRAFGAGFLKQPKLNDALLEMFRNEYIGTAPYLSCLPSLRHHRLCPTDQFIVLSSDGLYQYLTNEEVVSYVENFMEKFPDGDPAQHLIEELLCRAARKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17726057 17734433 - Lsi07G012180.1 Lsi07g01218 667640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01218 813 Pfam Protein phosphatase 2C 634 766 IPR001932 -
Lsi07g01218 813 Gene3D - 252 808 IPR036457 -
Lsi07g01218 813 CDD PP2Cc 513 801 IPR001932 -
Lsi07g01218 813 ProSiteProfiles PPM-type phosphatase domain profile. 267 801 IPR001932 -
Lsi07g01218 813 SUPERFAMILY PP2C-like 279 802 IPR036457 -
Lsi07g01218 813 SMART PP2C_4 267 799 IPR001932 -
Lsi07g01218 813 PANTHER PROTEIN PHOSPHATASE 2C 21 811 IPR015655 GO:0004722|GO:0006470
Lsi07g01218 813 PANTHER PROTEIN PHOSPHATASE 2C 29 21 811 - -
Lsi07g01218 813 MobiDBLite consensus disorder prediction 64 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01428 Lsi-Chr1:12411139 Lsi07g01218 Lsi-Chr7:17726057 1.65E-33 dispersed
Lsi05g01536 Lsi-Chr5:23151768 Lsi07g01218 Lsi-Chr7:17726057 1.08E-14 dispersed
Lsi07g01218 Lsi-Chr7:17726057 Lsi07g01082 Lsi-Chr7:16190074 6.97E-37 dispersed
Lsi07g01218 Lsi-Chr7:17726057 Lsi10g01376 Lsi-Chr10:17901763 3.86E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01218 - - bhj:120092087 1507.27