Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01232 ATGACGGCTTCAAAAGACCAAAACTCTGTCCACAGAAAAAACCCTCTTGCCACGCTTGCTCCCGTGGAAGCGGTTCTATTCGATGTAGATGGAACATTGTGTGATTCAGATCCACTCCATTACTATGCCTTTCGCAAAATGCTTCAAGAGATTGGTTTCAATGATGGGATTCCAATTGATGAGGAGTTTTTCATTAAAAATATTGCTGGCAAGAATAATGATGGTATTGCCCGAACGCTATTCCCCGATGATTTCGAACGAGGTTCGAAATTTATCAATGAGAAGGAAGCTATGTTTAGGAGATTGGTTACTGAACAATTAGAGCCTGTGAATGGCTTGTATAAAGTGAAGAAATGGATAGAAGATCGCGGATTGAAACGTGCTGCAGTTACAAATTCCTCTCAGACGAATGCCGAGTTCATGATCTCCATGCTTGGTCTTACAGATTTTTTTGAGGCTGTTATTATAGGTGATGAATGTGAGCATCCCAAACCACATCCAGAACCATATTTAAAGGCTTTGGAAGATTCTGTAACAGGGATCAAAGCTGGAGTAGCAGCCGAGATGCCTGTCGTCGGTATTGCAACGAGAAATCCCGAGCAGTTGTTGATGCAAGCAATGCCTACTCTCCTCGTAAAGGACTACGACGATCCGAAATTATGGGCAGCCTTGGACGAATTCAATAAGAGTGGAGATACCGTTACGAATGCATGA 714 42.72 MTASKDQNSVHRKNPLATLAPVEAVLFDVDGTLCDSDPLHYYAFRKMLQEIGFNDGIPIDEEFFIKNIAGKNNDGIARTLFPDDFERGSKFINEKEAMFRRLVTEQLEPVNGLYKVKKWIEDRGLKRAAVTNSSQTNAEFMISMLGLTDFFEAVIIGDECEHPKPHPEPYLKALEDSVTGIKAGVAAEMPVVGIATRNPEQLLMQAMPTLLVKDYDDPKLWAALDEFNKSGDTVTNA 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17981484 17984937 + Lsi07G012320.1 Lsi07g01232 667654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01232 237 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 22 33 IPR006439 -
Lsi07g01232 237 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 120 133 IPR006439 -
Lsi07g01232 237 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 151 167 IPR006439 -
Lsi07g01232 237 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 22 214 - -
Lsi07g01232 237 SUPERFAMILY HAD-like 18 227 IPR036412 -
Lsi07g01232 237 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 1 235 - -
Lsi07g01232 237 CDD HAD_BPGM-like 24 196 - -
Lsi07g01232 237 Gene3D Putative phosphatase; domain 2 37 105 IPR023198 -
Lsi07g01232 237 Pfam Haloacid dehalogenase-like hydrolase 25 176 IPR041492 -
Lsi07g01232 237 SFLD Haloacid Dehalogenase 22 214 - -
Lsi07g01232 237 Gene3D - 23 217 IPR023214 -
Lsi07g01232 237 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 1 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01232 - - - bhj:120089975 397.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01232 Lsi-Chr7:17981484 Lsi09g01862 Lsi-Chr9:27444397 4.61E-90 dispersed
Lsi07g01232 Lsi-Chr7:17981484 Lsi07g01233 Lsi-Chr7:17988362 5.11E-143 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g623 . . . . . . . . . . . . . . . . . Bhi11g00109 Tan01g2132 . . Hepe06g1060 . . . . . . . . . . Cone12ag0439 . . Lsi07g01232 . . Cme06g02501 . . . . . . . Bma12g00258 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00206 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002057 0 2 1 2 1 2 3 2 2 2 2 2 3 3 3 3 2 3 2 2 3 2 2 3 2 3 1 2 3 3 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01232 Lsi_Chr07 FPKM 1.408842 1.231217 1.632523 1.199366 5.262552 4.942749 4.512633 1.630759 1.702751 1.437486