Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01233 ATGACGGCTTCAAAAGCTGAAAATTCAGTCGACAGCAAAAGCCATCTTGCCGCGCTTGCTCCTGTGGAAGGAGTTCTATTCGATGTAGATGGAACATTGTGTGACTCAGATCCGCTCCATTACTATGCCTTCCGTGAAATGCTTCAAGAGATTGGTTTCAATGGCGGGGTTCCAATTGATGAGGAATTTTTCATTAAAAATGTTGCTGGCAAGCATAACGATGATATTGCCCGAGCGCTATTCCCTGATGATTTCGAACGAGGTTTGAAATTTTGCGATGAGAAGGAGGCTATGTTTAGGAGATTGGTTACCGAACAATTAAAGCCTGTGAATGGCTTGTATAAAGTGAAGAAATGGATAGAAGACCGTGGATTGAAACGTGCTGCAGTTACAAATGCCCCTCGGCCGAATGCCGAGCTCATGATCTCCATGCTTGGTCTTACGGATTTTTTTGAGGCTATTATTATAGGTGGTGAATGTGAACATGCCAAACCACATCCAGAACCATATTTAAAGGCTTTGGAAGTACTCGAAGTGTCAAAGGATCACACTTTCATTTTTGAGGATTCTGTATCAGGGATCAAAGCTGGAGTGGCAGCCGGAATGCCTGTTGTCGGTATAGCAACGAGAAATCCTGAGCACTTGTTGATGCAAGCAAAGCCTGCCCTCATTGTAAAGGACTATGACGATCTGAAATTGTGGACAGCTTTGGACGAACTCGATAAGAGAGGAGGTACCATTAAGAATGCATGA 753 43.82 MTASKAENSVDSKSHLAALAPVEGVLFDVDGTLCDSDPLHYYAFREMLQEIGFNGGVPIDEEFFIKNVAGKHNDDIARALFPDDFERGLKFCDEKEAMFRRLVTEQLKPVNGLYKVKKWIEDRGLKRAAVTNAPRPNAELMISMLGLTDFFEAIIIGGECEHAKPHPEPYLKALEVLEVSKDHTFIFEDSVSGIKAGVAAGMPVVGIATRNPEHLLMQAKPALIVKDYDDLKLWTALDELDKRGGTIKNA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17988362 17991674 + Lsi07G012330.1 Lsi07g01233 667655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01233 250 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 128 207 IPR006439 -
Lsi07g01233 250 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 1 246 - -
Lsi07g01233 250 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 21 234 - -
Lsi07g01233 250 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 21 234 - -
Lsi07g01233 250 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 1 246 - -
Lsi07g01233 250 Pfam Haloacid dehalogenase-like hydrolase 25 206 IPR041492 -
Lsi07g01233 250 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 151 167 IPR006439 -
Lsi07g01233 250 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 22 33 IPR006439 -
Lsi07g01233 250 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 120 133 IPR006439 -
Lsi07g01233 250 Gene3D - 23 231 IPR023214 -
Lsi07g01233 250 Gene3D Putative phosphatase; domain 2 37 105 IPR023198 -
Lsi07g01233 250 CDD HAD_BPGM-like 24 209 - -
Lsi07g01233 250 SUPERFAMILY HAD-like 19 234 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01233 - - - bhj:120089975 477.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00053 Lsi-Chr6:414213 Lsi07g01233 Lsi-Chr7:17988362 6.07E-15 dispersed
Lsi07g01233 Lsi-Chr7:17988362 Lsi09g01862 Lsi-Chr9:27444397 6.67E-106 dispersed
Lsi07g01232 Lsi-Chr7:17981484 Lsi07g01233 Lsi-Chr7:17988362 5.11E-143 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g622 . Blo03g00108 . . . Bpe07g00230 . . Cmo06g00860 . . . . . Sed07g1320 . . Bhi11g00108 Tan01g2131 Cmetu06g0814 . . . . . . . . . . . . . . . Lsi07g01233 . . Cme06g02502 . . . . . . . Bma12g00230 . . . Cma06g00838 . . . . . . . . . . . . . . . . . . . . Csa03g00207 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002057 0 2 1 2 1 2 3 2 2 2 2 2 3 3 3 3 2 3 2 2 3 2 2 3 2 3 1 2 3 3 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01233 Lsi_Chr07 FPKM 1.784141 1.145409 1.953638 1.651972 1.766259 2.433832 2.133545 6.873068 4.771177 5.801514