Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01235 ATGGTGGAATCGGTTGAGTTACCGAGTCGACTCGGAATTCTTCCCTTCAGAAACAAGGTTCTTTTACCAGGCGCCATTATTCGGATTCGATGCACTTCATCCAGCAGTGTGAAATTGGTGGAGCAAGAGTTGTGGCAGCGAGAAGAGAAGGGATTGATTGGTATTCTTCCAGTTCGAGATGATGCTGATGCATCAGCGATTGTCCCTGTGTTATCTCAAGGTGTGGGAAGTGATTCTGGAGATCGTAGCTCGAGGGTTCAACCTGGAGCCTCTGACTCACAAAGAGTAGATGGGAAAAATCATCAGGAAGTTATTCAATGGCATTCAAGGGGTGTTGCTGCTCGTGCCTTGCAGCTGTCTAGAGGAGTGGAGAAACCAAGTGGAAGAGTGACGTATACGGTTGTGCTAGAAGGTTTATGTAGATTTACTGTCCAGGAGCTTAGCACCAGAGGAACATATTATACTGCACGAGTATCACCTTCAGAAATGACAAAGGCAGAGATGGAGCAAGTGGAGCAAGACCCAGATTTTATTTCATTATCTCGACAATTCAAAGCTACTGCAATGGAGCTTATATCCGTTCTTGAACAGAAACAAAAAACTGGAGGGCGGACAAAAGTTCTTTTGGAGACAGTTCCAGTTCATAAACTGGCTGATATATTTGTTGCCAGTTTTGAGATGAGTTTTGAAGAGCAACTATCTATGCTGGATTCAGTTGACTTAAGAGTAAGGCTTTCAAAAGCAATGGAGTTAGTTGACAGGCATTTACAGTCGATACGTGTAGCAGAGAAGATTACACAGAAAGTAGAAGGACAGTTATCAAAATCACAGAAAGAATTCCTTTTGCGTCAGCAGATGAGGGCCATAAAGGAGGAGCTTGGTGATGACGACGATGAAGATGATTTGGTTGCCCTGGAAAGAAAGATGCAAAGTGCTGAAATGCCTGCTAATATCTGGAAGCATGCTCAGAGAGAGTTGAGGAGCCTTAAAAAAATGCAACCTCAACAGCCTGGATATAACAGCTTGCGAGTTTACCTTGAGCTTCTTGCTGACCTTCCATGGAAAAAGGCTACTGAAGAAAATGAATTAGACTTGAAAGCTGCAAAGGAACGTCTTGACAGTGACCATTATGGTTTGGTCAAGGTCAAGCAACGAATTATTGAATATCTTGCTGTTCGGAAGCTTAAGCCAGATGCTAGAGGGCCTGTCCTGTGCTTTGTTGGGCCACCGGGTGTGGGAAAGACATCTTTGGCATCATCTATTGCTGCTGCTCTGGGCAGAAAATTTGTACGCATATCCCTGGGTGGTGTTAAAGATGAGGCTGATATTAGAGGACATAGGAGGACCTACATTGGAAGCATGCCAGGGCGTCTTATTGATGGACTGAAGGTAGTCTTCCCCTCTCCTCCTTTTGGTCCAAATTTATTTGCTCTTTCAGAATTATTATTTATCCAAAGCTTCAGCGTTTGTTTGCAGCAGAGAGTAGCTGTTTGCAACCCAGTCATGCTCTTAGATGAGATTGACAAGACAGGTTCTGATGTGCGGGGCGATCCAGCTTCAGCTCTACTAGAGGTTCTTGACCCTGAACAGAACAAAAAGTTCAGTGATCATTATTTGAATGTCCCATTTGACCTTTCAAAGGTCGTCTTTGTGGCCACTGCTAACAGAATGCAGCCTATACCGCCTCCTCTTCTAGATAGGATGGAAGTCATTGAGCTGCCTGGATACACACCAGAGGAAAAACTTAAGATTGCAATGCACCATTTGATTCCACGAGTTTTGGAACAGCATGGGCTAAGCACTGAATTTCTTCAAATTCCAGAGTCTCCCTACTCTGTGGTTCCTACGTACATCCTGAATCGAGTTCCTACCCTCCCCCACAATAACCGTGCGCTAGGTCTGCATGTGATGCCGTATTGTTATGAGAAATCCATGCACATTTATGCTATTCGTGCCGGGCTGCTTTTACTTTTCCCTTGTTTCTTTCTATCTATGGACATGCAGCATCAATGCCGTGTTGCTATGGTTAAGCTTGTGGTTCAAAGATACACTAGAGAGGCTGGTGTACGAAATCTTGAGAGAAATTTGGCTGCGTTGGCTCGTGCTGCTGCTGTTAGAGTTGTGGAAAGAGATCAAACTGTCCCGTTGAATAAAGAAGTGCATCAGGTTTCTTCTCCTCTGTTGGAAAACAGACTTTCTGATGGAGCTGAAGTAGATATGGAGGTCATCCCAATTGGAGCTGATCATGAGATACCGAACCCGTTGAGGATAGCCTCTCCATTGGTTGTTGACGAGGCTATGCTTGAAAAAGTTCTTGGGCCTCCTAGGTTTGATGACAGAGAGGCAGCCGAGCGGGTTATATCACCTGGGATATCTGTTGGATTGGTTTGGACTGCCGTTGGGGGAGAGGTTCAGTTCGTGGAGGCTACAGCAATGTCTGGGAAGGGAGAATTACATCTTACCGGCCAGCTTGGTGATGTCATTAAAGAATCAGCTCAGATAGCCCTTACCTGGGTCCGAGCGAGGGCAACAGATCTGAAACTGGCATCAGCTTGTGAATCTAATCTTTTGGAGGGTCGTGATATTCATATACATTTTCCTGCTGGTGCGGTGCCTAAGGATGGGCCTTCAGCCGGCGTGACTCTTGTAACAGCCCTGGTCTCACTGTTTGGTCAGAAAAGAGTTAGGGCTGATACTGCAATGACAGGAGAAATGACTCTGAGGGGTCTTGTTCTACCTGTTGGTGGCATCAAGGACAAGATATTAGCTGCACACCGTTATGGGATAAAGAGAGTTATTCTGCCAGAGAGAAATTTGAAAGATTTAGTGGAAGTTCCTTCCGGCGTGCTTGCTAGTATGGAGATATTACTAGCGAAGCGGATGGAAGATGTACTGGAGCAGGCTTTTGAAGGTGGATGTCCATGGAGACTACACTCCAAGTTATGA 2946 45.32 MVESVELPSRLGILPFRNKVLLPGAIIRIRCTSSSSVKLVEQELWQREEKGLIGILPVRDDADASAIVPVLSQGVGSDSGDRSSRVQPGASDSQRVDGKNHQEVIQWHSRGVAARALQLSRGVEKPSGRVTYTVVLEGLCRFTVQELSTRGTYYTARVSPSEMTKAEMEQVEQDPDFISLSRQFKATAMELISVLEQKQKTGGRTKVLLETVPVHKLADIFVASFEMSFEEQLSMLDSVDLRVRLSKAMELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDDDDEDDLVALERKMQSAEMPANIWKHAQRELRSLKKMQPQQPGYNSLRVYLELLADLPWKKATEENELDLKAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKVVFPSPPFGPNLFALSELLFIQSFSVCLQQRVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKKFSDHYLNVPFDLSKVVFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLKIAMHHLIPRVLEQHGLSTEFLQIPESPYSVVPTYILNRVPTLPHNNRALGLHVMPYCYEKSMHIYAIRAGLLLLFPCFFLSMDMQHQCRVAMVKLVVQRYTREAGVRNLERNLAALARAAAVRVVERDQTVPLNKEVHQVSSPLLENRLSDGAEVDMEVIPIGADHEIPNPLRIASPLVVDEAMLEKVLGPPRFDDREAAERVISPGISVGLVWTAVGGEVQFVEATAMSGKGELHLTGQLGDVIKESAQIALTWVRARATDLKLASACESNLLEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFGQKRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPSGVLASMEILLAKRMEDVLEQAFEGGCPWRLHSKL 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18012115 18023419 - Lsi07G012350.1 Lsi07g01235 667657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01235 981 Gene3D - 788 973 IPR014721 -
Lsi07g01235 981 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 493 610 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Lsi07g01235 981 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 670 981 - -
Lsi07g01235 981 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 465 - -
Lsi07g01235 981 ProSiteProfiles Lon N-terminal domain profile. 11 254 IPR003111 -
Lsi07g01235 981 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 493 610 - -
Lsi07g01235 981 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 924 942 - -
Lsi07g01235 981 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 871 890 - -
Lsi07g01235 981 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 901 920 - -
Lsi07g01235 981 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 408 427 - -
Lsi07g01235 981 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 789 805 - -
Lsi07g01235 981 SMART lon_5 10 254 IPR003111 -
Lsi07g01235 981 CDD AAA 385 576 - -
Lsi07g01235 981 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 981 IPR027501 GO:0004252|GO:0006515
Lsi07g01235 981 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 465 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Lsi07g01235 981 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 874 882 IPR008268 GO:0004176|GO:0004252|GO:0006508
Lsi07g01235 981 Gene3D - 574 620 - -
Lsi07g01235 981 ProSiteProfiles Lon proteolytic domain profile. 786 971 IPR008269 GO:0004176|GO:0004252|GO:0006508
Lsi07g01235 981 SUPERFAMILY PUA domain-like 11 253 IPR015947 -
Lsi07g01235 981 SMART AAA_5 400 575 IPR003593 -
Lsi07g01235 981 MobiDBLite consensus disorder prediction 72 98 - -
Lsi07g01235 981 Pfam ATP-dependent protease La (LON) substrate-binding domain 13 254 IPR003111 -
Lsi07g01235 981 Pfam ATPase family associated with various cellular activities (AAA) 404 571 IPR003959 GO:0005524|GO:0016887
Lsi07g01235 981 Gene3D - 665 777 - -
Lsi07g01235 981 SUPERFAMILY Ribosomal protein S5 domain 2-like 789 968 IPR020568 -
Lsi07g01235 981 Gene3D - 162 297 - -
Lsi07g01235 981 MobiDBLite consensus disorder prediction 76 95 - -
Lsi07g01235 981 Gene3D - 365 573 IPR027417 -
Lsi07g01235 981 Gene3D - 2 160 IPR046336 -
Lsi07g01235 981 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 670 981 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Lsi07g01235 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 714 IPR027417 -
Lsi07g01235 981 Gene3D - 304 352 - -
Lsi07g01235 981 Pfam Lon protease (S16) C-terminal proteolytic domain 763 970 IPR008269 GO:0004176|GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01235 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] - egr:104443593 1395.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01235 Lsi-Chr7:18012115 Lsi11g00628 Lsi-Chr11:6652139 1.15E-136 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g584 Blo02g01005 . . . Bpe05g00540 . . . Cmo06g00858 Cmo16g01139 . . . . . Cpe14g00900 . Bhi11g00104 . . . . Mch10g1616 . Cla10g00192 Cam10g0198 Cec10g0204 Cco10g0205 Clacu10g0202 Cmu10g1046 Cre10g0452 . . Cone6ag0622 Cone9ag0625 Lsi07g01235 . . Cme06g02505 . . . . . . Bma05g00397 . . . . Cma06g00835 Cma16g01089 . Car16g01031 . . . . . . . . . . . . . . . . . Csa03g00209 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008731 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01235 Lsi_Chr07 FPKM 2.992395 2.941539 3.604109 3.669402 4.191678 3.955455 5.377259 1.755371 1.450615 1.969975