Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01236 ATGGCGGCTCCGTCGCCAACCGTTAGTAACAACAGCTCTGACACCGCCACCACCACCACTGCCAGCGCCGTCACGGCTAACGCCGCTGTTTCCTCCAACCACTTGGCCAACCGTACAGGAACGCCGCCGAAGACTCTTCGCGGCCTTAACAAGCCCAAGTGTAGGGTTTGTGGCAATGTTGCTCGTTCCAGGGATGGGATTATGTGGGTGGGGTGGGGAAACAACATCCCTTGTAACCTTGGAACACTCTATCTAGAAAAGGAACTAGCGATTCTCAGAACACAAGATGCACTTATGTTAAAAGCAAATGCGACTTTTCCAGACAAGACACCTACTTCTAGCTCTCCTCTATTTGACAAGCAATCACCAGATCCATCATCATCCGGGACTTCGCATAGAGTAGCTTCACTTCGACAACTTTCTAGCAACTTTTCCCAATTCAACAATGTGCAAATCCCTCTCCGTTCACGGAAGCCATTGACCAGAAAGGATGCCGCCGCAATTAATGAATGGAGATTTTCCAAGTTAAGAGAATTTCGGGAGAGAAATATTGAAGCAGAAAATGAAGCTTTTGATCGATACATGCAGAATGTTAATCTATTGGAAGAGGTCTTTTCCATGAGATCTATGATTGATGGGTCTCTTAAGGACGGACCCTCTATAAACTCTGCTACAGAAGCCAACCCTGAGGAAATGATACCTGGATTGAAGTTAAAGTTAGGATCAGATTCAGTTAGATCAGACAACTCTAGAAAGAGGATACGGGAAATTGTTGAAGATGGACTAAGCAAATTTCAAAAAGTAAAGACAACCGATAACGTCGATGAGGTCACTGACCATGCAGAAGCTGATAAGGCTGCTGACCAGACGAATCTTAATGATGGATGCAAAACGGTAAAAGGTTGGCATGCCGAAAGAGCTCGAGCTTTAGGTGATCTCATTGACAAGCTAAACAAAGCCCGGAATGAGGAGGATTTAAAATCTTGCTTGGCAATGAAACATCAGCTTTTTAACCAGCAAAAAACAACATCCAGCCAAACAGAATCTGAAGAGACTGACATGTCCAAGGAGCAAGTTATAAAGAAAGATTTAGACTCAAGGAAAGAATTGGGTTATTCATTGCCAAAGTTGATTAATAAAACTAATATTGATCAAGAAACTCTGAACCAAATTGATGCTCACTTTTCTTCTGTCAAGCAGATAGGCACTCTATGA 1215 43.54 MAAPSPTVSNNSSDTATTTTASAVTANAAVSSNHLANRTGTPPKTLRGLNKPKCRVCGNVARSRDGIMWVGWGNNIPCNLGTLYLEKELAILRTQDALMLKANATFPDKTPTSSSPLFDKQSPDPSSSGTSHRVASLRQLSSNFSQFNNVQIPLRSRKPLTRKDAAAINEWRFSKLREFRERNIEAENEAFDRYMQNVNLLEEVFSMRSMIDGSLKDGPSINSATEANPEEMIPGLKLKLGSDSVRSDNSRKRIREIVEDGLSKFQKVKTTDNVDEVTDHAEADKAADQTNLNDGCKTVKGWHAERARALGDLIDKLNKARNEEDLKSCLAMKHQLFNQQKTTSSQTESEETDMSKEQVIKKDLDSRKELGYSLPKLINKTNIDQETLNQIDAHFSSVKQIGTL 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18029725 18037248 + Lsi07G012360.1 Lsi07g01236 667658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01236 404 PANTHER ELECTRON CARRIER/IRON ION-BINDING PROTEIN 100 404 - -
Lsi07g01236 404 PANTHER ELECTRON CARRIER/IRON ION-BINDING PROTEIN 1 64 - -
Lsi07g01236 404 MobiDBLite consensus disorder prediction 338 358 - -
Lsi07g01236 404 Coils Coil 184 204 - -
Lsi07g01236 404 MobiDBLite consensus disorder prediction 106 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01236 - - - csv:101215791 565.074
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g583 Blo02g01006 Blo03g00130 . Bda08g00615 Bpe05g00541 . . . Cmo06g00857 Cmo16g01140 . . . . Sed07g1316 Cpe14g00901 . Bhi11g00102 Tan01g2126 Cmetu06g1446 . . Mch10g1615 . Cla10g00193 Cam10g0199 Cec10g0205 Cco10g0206 Clacu10g0203 Cmu10g1047 Cre10g0453 Cone8ag0445 Cone12ag0434 . . Lsi07g01236 . . Cme06g02506 . . . . . . Bma05g00398 Bma12g00200 . . . Cma06g00834 Cma16g01090 . Car16g01032 . . . . . . . . . . . . . . . . . Csa03g00210 Chy06g02110 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006084 1 1 3 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01236 Lsi_Chr07 FPKM 10.351602 11.182071 5.966605 6.773638 15.951495 13.812915 15.374797 9.625414 8.645241 9.212649