Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01239 ATGGAGGGTTTAATCAAGGGTCTCATAGATGTCGCAATCGGCCACGACGGCGACGACAACGATCAACAATCGGCTTCCCAGTCTCGCGACGAGCGATCCAGATCCACTTGGGCTCAGGTGGTTACTGGGGAGGAGGATGGAGGAGATCGGAGACATGGGTATGATCGGAATCGGAGGGACAATGAGGAAGAGGGTCGTTCGCGGCGTGAGGAGTGGGAGGTTGAGGGTTCGAGGATTTCTGGTCAACGCCAACAGAGTGAATATGGGAATGAGCATGGGTACAACAGAAACCAGTGGGCTAAAGAGGTCGTTTTTCTTGTTCTTTATTTCTCAGTGTTGTTTTTATTCAGTGAAATCACTCAGTTTTCTTCACTCATATATTCTAATGGTGTTATGTTTAACTGCACTGTACAGGAGAGCTCTGAGGAGAAAAATGATGGGTGGGAGACTGTCCACAAAAAGCCATCTAGGAGACAACACAAGGTGCAAAAAGATAATTGGGAAGGATACAAACGGCCTGCCAGTGAACAAAATTACTCTGATGAGGTGGAAGTTGGTGCTGAGCTTGAACCCTCAGAAGATGAGCTTGCTGATTTGTCTTATGCATGTAACAAGCTTTGGGAACTTGATTTAAATCGGTTGGTACCTGGAAAAGATTATGAAATTGATTGTGGTGAAGGGAAGAGGGTCAGTGGAAGGGAAGATATGGCACAAGGAAGCCTCTTTAGTTGGGTTAGGGAAGACGTATTTAGGAAGCCAACATTTTCACGCTTTTGTTCTCTACTTGATAACTACAATCCGAATCAAGGGAGCAAAGAAGTTGTGACATCTGAGGAGAGGCAAGAGCAGGCAGCATTCATTGAAGAAATTAGTAGAACTGCAGCAATTAAGTACCTTCACAAGTATCTTTCATCCAAGGGAGTTGCATCCAATAACTATCAAGATTTTAAACGTTTACTGACTAGCCTGTGGTTTGATCTTTATGGTCGGGGTGGAACATCTGGTTCCTCTTCTGCTTTTGAGCATGTTTTTGTTGGAGAAATCAAGCAACAAGGAGAACAAGAGGTTTCTGGTTTCCACAACTGGCTTCAGTCTATCATTTTCTTAATATTAGTATTTTCTTTGCTGGAGTTTCCTGAACTTACTATTTTTCTTATATCTGCTGTCCATGTCCATTTATTCCAAATAAAGTTTTACCTTGAAGAAGCTAAAGGGAATGTTGACTATCAAGGTTACATTTTCCCCCGACGACGTGGCCAGTTTCCTGATTCAGAAACTCAATTGCTTACCATTCAGTTCGAATGGAATGGTGTTCTCAAATCTGTCTCAAGCACTTTAATAGGAGTTAGCCCTGAGTTTGAAGTTGCACTCTATACACTATGCTTCTTCCTTGGTGGAGAGGACAACCATGTCGAGCTCGGACCGTATGCTGTTAATATCAAGTGTTATCGATTAGGAAACAAAATCGGGTCTGTGTTTCCGGTAGCAGAGTCTTGA 1497 43.29 MEGLIKGLIDVAIGHDGDDNDQQSASQSRDERSRSTWAQVVTGEEDGGDRRHGYDRNRRDNEEEGRSRREEWEVEGSRISGQRQQSEYGNEHGYNRNQWAKEVVFLVLYFSVLFLFSEITQFSSLIYSNGVMFNCTVQESSEEKNDGWETVHKKPSRRQHKVQKDNWEGYKRPASEQNYSDEVEVGAELEPSEDELADLSYACNKLWELDLNRLVPGKDYEIDCGEGKRVSGREDMAQGSLFSWVREDVFRKPTFSRFCSLLDNYNPNQGSKEVVTSEERQEQAAFIEEISRTAAIKYLHKYLSSKGVASNNYQDFKRLLTSLWFDLYGRGGTSGSSSAFEHVFVGEIKQQGEQEVSGFHNWLQSIIFLILVFSLLEFPELTIFLISAVHVHLFQIKFYLEEAKGNVDYQGYIFPRRRGQFPDSETQLLTIQFEWNGVLKSVSSTLIGVSPEFEVALYTLCFFLGGEDNHVELGPYAVNIKCYRLGNKIGSVFPVAES 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18129267 18138038 + Lsi07G012390.1 Lsi07g01239 667661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01239 498 MobiDBLite consensus disorder prediction 12 28 - -
Lsi07g01239 498 SUPERFAMILY EndoU-like 395 496 IPR037227 -
Lsi07g01239 498 SUPERFAMILY EndoU-like 197 364 IPR037227 -
Lsi07g01239 498 MobiDBLite consensus disorder prediction 44 77 - -
Lsi07g01239 498 ProSiteProfiles Eukaryotic uridylate-specific endoribonuclease (EndoU) domain profile. 195 498 IPR018998 GO:0004521
Lsi07g01239 498 MobiDBLite consensus disorder prediction 8 90 - -
Lsi07g01239 498 Pfam Endoribonuclease XendoU 396 494 IPR018998 GO:0004521
Lsi07g01239 498 Pfam Endoribonuclease XendoU 199 365 IPR018998 GO:0004521
Lsi07g01239 498 PANTHER PLACENTAL PROTEIN 11-RELATED 395 497 IPR039787 GO:0004521
Lsi07g01239 498 CDD XendoU 195 494 IPR018998 GO:0004521
Lsi07g01239 498 PANTHER PLACENTAL PROTEIN 11-RELATED 137 365 IPR039787 GO:0004521
Lsi07g01239 498 PANTHER - 137 365 - -
Lsi07g01239 498 PANTHER - 395 497 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01239 K14648 ENDOU, PP11; poly(U)-specific endoribonuclease [EC:3.1.-.-] - csv:101208900 774.237
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g578 . Blo03g00133 Bda06g01303 . . Bpe07g00202 . . Cmo06g00853 . . . . . . . . Bhi11g00099 . . . Hepe06g1068 Mch10g1611 . Cla10g00199 Cam10g0205 Cec10g0210 Cco10g0211 Clacu10g0208 Cmu10g1051 Cre10g0459 Cone8ag0441 . . . Lsi07g01239 . . Cme06g02510 . . . . . . . Bma12g00197 . . . Cma06g00830 . . . . . . . . . . . . . . . . . . . . Csa03g00213 Chy06g02107 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002601 1 2 2 2 2 1 2 2 1 2 2 1 2 3 2 2 1 2 2 1 3 2 2 3 2 3 2 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01239 Lsi_Chr07 FPKM 21.097097 21.500734 11.073378 11.748946 9.412192 9.182452 9.710506 9.766638 8.022589 9.501037