Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01243 ATGGATACCTTATCTTCAATCAGCGAGGAACTTGCAGATATCGAGGGGCAAATCAATGATATCTTCCGAGCTTTGTCAAATGGATTTCAGAAGTTGGAAAAGATTAAGGACTCAAATAGGCGGAGTAGACAATTGGAAGAGTTGACAGATAAGATGCGAGAATGTAAGAGGCTTATTAAAGAGTTTGACAGAGAAGTCAAGGATTTAGAAGGAAGGAACAACTCTAACACTAACAAAATGCTGAGTGAGAAAAAGCAGTCTATGATCAAAGAGTTGAACTCATATGTTGCCCTTAAAAAGCAACATGCAAGCACTCTCGACAACAAGCGTATCGATCTCTTTGATGGACCTGGTGAAAGTTATGGGGAAGAAAATGTCTTGCTAGCTTCAAATATGACAAATCAACAATTGATTGATAAAGGAAACAGGATGATGGATGAGACTGATGAAGCAATTGAGAGGTCAAAAAAGGTAGTTCAAGAGACGGTGAATGTGGGAACGGAGACAGCAGCAGCTCTGAAGGCGCAGACGGAGCAAATGAGCAGGATAGTGAACGAGCTCGACTCCATACATTTCTCACTGAAGAAAGCCTCAAAACTCGTGAAGGAATTGGGGAGACAAGTTGCAACTGATAAGTGTATAATGGCCCTACTCTTCATCATTGTCCTTGGTGTCATTGCCATTATCATTGTCAAGCTGGTGAATCCAAATAACAAGGACATTCGGGACATCCCGGGGCTGGCACCACCCGTTCAGAGTCGAAAACTGCTATGGAATTCCGGTTAG 786 42.37 MDTLSSISEELADIEGQINDIFRALSNGFQKLEKIKDSNRRSRQLEELTDKMRECKRLIKEFDREVKDLEGRNNSNTNKMLSEKKQSMIKELNSYVALKKQHASTLDNKRIDLFDGPGESYGEENVLLASNMTNQQLIDKGNRMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIHFSLKKASKLVKELGRQVATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIRDIPGLAPPVQSRKLLWNSG 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18166398 18171334 - Lsi07G012430.1 Lsi07g01243 667665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01243 261 SUPERFAMILY SNARE fusion complex 131 205 - -
Lsi07g01243 261 SMART tSNARE_6 137 204 IPR000727 -
Lsi07g01243 261 CDD SNARE_SNAP25N_23N_29N_SEC9N 139 203 IPR044766 GO:0005484|GO:0031201
Lsi07g01243 261 Pfam Sec20 150 232 IPR005606 GO:0005484|GO:0006890
Lsi07g01243 261 Coils Coil 45 79 - -
Lsi07g01243 261 PANTHER NOVEL PLANT SNARE 11 1 250 - -
Lsi07g01243 261 Gene3D - 133 212 - -
Lsi07g01243 261 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 250 - -
Lsi07g01243 261 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 142 204 IPR000727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01243 K08494 NSPN; novel plant SNARE - csv:101208413 478.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01243 Lsi-Chr7:18166398 Lsi09g01527 Lsi-Chr9:23356960 8.52E-91 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g574 . . . . . . Bma07g00986 . Cmo06g00850 Cmo16g01145 . . . . Sed07g1309 Cpe14g00906 . Bhi11g00095 Tan01g2117 Cmetu06g1743 . Hepe06g1072 Mch10g1608 . Cla10g00202 Cam10g0208 Cec10g0213 Cco10g0214 Clacu10g0211 Cmu10g1054 Cre10g0462 Cone8ag0438 Cone12ag0423 . . Lsi07g01243 . . Cme06g02514 . Blo19g00158 . Bda09g00689 Bpe08g00871 . . . . . . Cma06g00827 Cma16g01096 . Car16g01038 . . . . . . . . . . . . . . . . . Csa03g00217 Chy06g02103 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001212 4 4 3 3 2 2 6 2 2 2 2 2 3 3 2 3 2 4 3 2 2 2 2 2 2 2 2 2 2 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01243 Lsi_Chr07 FPKM 139.288742 136.348511 185.969574 182.571701 252.081055 318.235962 239.003586 165.59404 177.170471 169.984528