Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01244 ATGGCAGTTTCTAAGCTTTTCCCTGAGTTCTACGAAGGGTTTGCTATGACCCAATCCACTTCTCTGTTATCGCGATTTCCCTTTTTCATGTCATCGGCTTCTTCCTTTTCTTTCCCTTTTGCAACCAAATCACTGGCTTCCCAAATCTTCCGCCATTTTCGTTGTCGCGAGTTGCTTCGAGTTCACTCGCGATTACTCATCCTCCTCTCTTTGCCCTTCATTTACTTCTTTCTTTCGAACCCTCGTCGTTCTGTTGTTCTCAAGTTGTTTGTCCTACTTTTCTTCTCCATCGCTGCTCTGGTTTTTCTCAATCTTGCAGTCCCTCGTCTCCCTTCTTCGATTCGTTTGTTTCTTGTTCGATCGTCCCCAATTAACGCTTTCTCATCTTCTGTTGCGACGAAGGCTGTTTCCAATGTTCGTTGGTCGATTGGATCGAAACCCAAGTCGGAGAAACGGTTGATGTCTGGTTCTTGGGTGAGAGTTTACAGTAATGGGGATGTTTACGAGGGGGAATTTCATAAAGGGAGGTGCTCGGGTAGTGGGGTTTATCACTACCATATGAGTGGAAGGTATGAAGGCGATTGGATTGATGAGAAATATGATGGATATGGAGTAGAAACATGGGCGAAAGGGAGTAGGTACCGTGGCCAGTACAGACAAGGATTGAGGAATGGGATTGGGATTTACAGATTCTACACAGGGGATGTCTATGCTGGGGAGTGGTCTAATGGCCAGTGCCATGGCTGTGGAGTTCATACTTGCCAAGATGGGAGCCGCTATGTTGGGGAGTTTAAGTGGGGTGTCAAACATGGATTGGGTCACTACCATTTTAGAAACGGAGATACATATGCAGGAGAGTATTTTGCAGACAAGATGCATGGATTTGGAGTTTATCGGTTCGGCAATGGACATTGTTACGAGGGAGCTTGGCACGAAGGAAATAGGCAAGGACTTGGTATGTACACTTTTAGGAATGGAGAGACACAATCTGGCCATTGGCAAAATGGGGTTCTTGATGTTCCCAGCCTTGAAAATAGCCATCCAGGGTCTTCTTATGCAGTCAGCCACGCTAAGGTTCTTGCCGCAGTCCAGGAAGCAAGAAGAGCTGCACAGAAAGCGTTTGATGCAGGAAGGGTGGACGAAAGAGTTAACAAAGCTGTAGCTGCTGCTAATAAAGCAGCAAACGCAGCAAGAGTTGCAGCTGTGAAGGCTGTTCAGAAACAAATGGATCAAGAGACCAGCACCAACCCACCAATCTTACTGTTCTTTAGAATTGAAAGGTACCTGCCTGGAACCTGCTTGCACAAGCATGCAGAACGGATGGCCGATCGAGGAGCAGATAGAAGAGCAGTAGATGAAGGATGGAACTATCCTGCCAATGTTGTGTTGTTGTATAGTGAAAATCAGCCTCAGCTCTGA 1419 46.51 MAVSKLFPEFYEGFAMTQSTSLLSRFPFFMSSASSFSFPFATKSLASQIFRHFRCRELLRVHSRLLILLSLPFIYFFLSNPRRSVVLKLFVLLFFSIAALVFLNLAVPRLPSSIRLFLVRSSPINAFSSSVATKAVSNVRWSIGSKPKSEKRLMSGSWVRVYSNGDVYEGEFHKGRCSGSGVYHYHMSGRYEGDWIDEKYDGYGVETWAKGSRYRGQYRQGLRNGIGIYRFYTGDVYAGEWSNGQCHGCGVHTCQDGSRYVGEFKWGVKHGLGHYHFRNGDTYAGEYFADKMHGFGVYRFGNGHCYEGAWHEGNRQGLGMYTFRNGETQSGHWQNGVLDVPSLENSHPGSSYAVSHAKVLAAVQEARRAAQKAFDAGRVDERVNKAVAAANKAANAARVAAVKAVQKQMDQETSTNPPILLFFRIERYLPGTCLHKHAERMADRGADRRAVDEGWNYPANVVLLYSENQPQL 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18177447 18181332 - Lsi07G012440.1 Lsi07g01244 667666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01244 472 PANTHER HISTONE H3 K4-SPECIFIC METHYLTRANSFERASE SET7/9 FAMILY PROTEIN 31 414 - -
Lsi07g01244 472 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 31 414 - -
Lsi07g01244 472 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 255 342 - -
Lsi07g01244 472 Gene3D - 198 242 - -
Lsi07g01244 472 Gene3D - 243 288 - -
Lsi07g01244 472 Gene3D - 289 355 - -
Lsi07g01244 472 Gene3D - 150 197 - -
Lsi07g01244 472 SMART morn 166 187 IPR003409 -
Lsi07g01244 472 SMART morn 258 279 IPR003409 -
Lsi07g01244 472 SMART morn 212 233 IPR003409 -
Lsi07g01244 472 SMART morn 281 302 IPR003409 -
Lsi07g01244 472 SMART morn 304 325 IPR003409 -
Lsi07g01244 472 SMART morn 235 256 IPR003409 -
Lsi07g01244 472 SMART morn 189 210 IPR003409 -
Lsi07g01244 472 Pfam MORN repeat 168 186 IPR003409 -
Lsi07g01244 472 Pfam MORN repeat 283 304 IPR003409 -
Lsi07g01244 472 Pfam MORN repeat 214 236 IPR003409 -
Lsi07g01244 472 Pfam MORN repeat 237 259 IPR003409 -
Lsi07g01244 472 Pfam MORN repeat 191 213 IPR003409 -
Lsi07g01244 472 Pfam MORN repeat 260 282 IPR003409 -
Lsi07g01244 472 Pfam MORN repeat 306 327 IPR003409 -
Lsi07g01244 472 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 162 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01244 - - - csv:101208169 748.429
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01244 Lsi-Chr7:18177447 Lsi09g01108 Lsi-Chr9:17730977 2.50E-176 dispersed
Lsi07g01244 Lsi-Chr7:18177447 Lsi04g02379 Lsi-Chr4:30916089 1.83E-120 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g571 . Blo03g00134 Bda06g01305 . . Bpe07g00201 . . Cmo06g00849 Cmo16g01146 . . . . Sed05g2359 Cpe14g00907 . Bhi11g00093 Tan01g2116 Cmetu06g0894 . Hepe06g1074 Mch10g1606 . Cla10g00203 Cam10g0209 Cec10g0214 Cco10g0215 Clacu10g0212 Cmu10g1055 Cre10g0463 . . Cone6ag0628 Cone9ag0631 Lsi07g01244 . . Cme06g02515 . . . . . . . Bma12g00195 . . Cmo19g00513 Cma06g00826 Cma16g01097 . Car16g01039 . . . . . . . . . . . . . . . . . Csa03g00218 Chy06g02102 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010482 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01244 Lsi_Chr07 FPKM 8.292707 8.343313 23.585342 22.871603 0.0 0.0 0.0 4.757174 3.412953 3.117364