Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01247 ATGGAGGATCGGTATGAGCCATTGAAGGACCTTGGCTCTGGAAATTTTGGAGTTGCTAGGCTCGTTAGAGACAAGAAGACAAACGAGCTTGTTGCAGTCAAGTACATTGAGAGAGGGAAGAAGATTGATGAGAAAGTTCAGAGGGAAATCATTAATCATCGATCGTTGCGGCATCCGAACATTATCAGATTCAAGGAGATTCTACATGGATGGTGTACCTCAACGAGTGATGTTTGCCTGCAGGTCTTCTTAACCCCAACTCATTTAGCCATTGTCATGGAATATGCAGCTGGTGGAGAACTTTTTGGAAGAATATGCAGTGCTGGTCGATTTAGTGAAGACGAGGTTGAAGTGTTACCCTTTCTTGCTTTTGTATATTTGATCATCTTTTCTATTTCATTTTCCTCCAAAATCCATTTCTCAAGTCACCTTTTATTCGGTTTCTCGGAACCTCTTCGCACATCAGGCAAGATTTTTCTTCCAGCAGTTAATATCCGGAGTCAGCTACTGCCATTCCATGGTATAACAATCAAATTTCGTTTTCATTGTCTAAAACATATGTTACTCTCTTGTTGTTTGTCTTTGTCGCACGGTTGCCTCGGCGGTTTAATCCAAATTTGTCACAGGGATCTGAAACTGGAAAACACACTATTGGATGGAAGTCCTACACCACAACTTAAGATATGTGACTTTGGTTACTCAAAGGTTGATAATCTACCATCCAATATAAACATAAGCCAGAATCTGTTTCACTCTCCTGTTTTGCTTGTTGATTTGTTACAGTCTGCTTTATTACACTCGCAACCGAAATCGACCGTAGGGACACCGGCATATATTGCACCGGAGGTTCTATCACGGAAGGAGTATGATGGCAAGATTTCAGATGTTTGGTCATGTGGAGTGACATTGTATGTGATGTTGGTTGGAGCATACCCGTTCGAGGATCCCGAAGATCCGAGAAATTTCCGTAAGACGATAGCAAGAATATTGAGTGTTCAATACTCAATACCCGATTATGTACGTGTGTCCGTGGAGTGTCGCAACCTTCTTTCTCGCATATTCGTCGCCAACCCCGCAAAGAGGATCACCATCCAAGAGATAAAACAGCTGCCATGGTTTTTCAAGAACTTGCCAAAGGAGCTCATTGAGATTGAGAAAACCAACTTCAAACAACAAGAACACAACCAACTTTCACAAAGCGTCGAGGAAATCATGCAGATTGTTCAGGAAGCAATGACACCAGGAGAAGCGTCTAAAGTCGGGGACCAAGCGTTGGCTGGAGGATCGGGGATCGACGATCTGGATGCCGATATAGATTCTGAAGTTGATGTCAGTGGTGACTATGTAACTGCTGTTTGA 1359 42.83 MEDRYEPLKDLGSGNFGVARLVRDKKTNELVAVKYIERGKKIDEKVQREIINHRSLRHPNIIRFKEILHGWCTSTSDVCLQVFLTPTHLAIVMEYAAGGELFGRICSAGRFSEDEVEVLPFLAFVYLIIFSISFSSKIHFSSHLLFGFSEPLRTSGKIFLPAVNIRSQLLPFHGITIKFRFHCLKHMLLSCCLSLSHGCLGGLIQICHRDLKLENTLLDGSPTPQLKICDFGYSKVDNLPSNINISQNLFHSPVLLVDLLQSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKISDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIARILSVQYSIPDYVRVSVECRNLLSRIFVANPAKRITIQEIKQLPWFFKNLPKELIEIEKTNFKQQEHNQLSQSVEEIMQIVQEAMTPGEASKVGDQALAGGSGIDDLDADIDSEVDVSGDYVTAV 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18215035 18218985 + Lsi07G012470.1 Lsi07g01247 667669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01247 452 PANTHER SERINE/THREONINE KINASE 3 117 - -
Lsi07g01247 452 PANTHER SERINE/THREONINE KINASE 262 441 - -
Lsi07g01247 452 Pfam Protein kinase domain 5 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g01247 452 Pfam Protein kinase domain 205 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g01247 452 SMART serkin_6 5 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g01247 452 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 3 117 - -
Lsi07g01247 452 ProSiteProfiles Protein kinase domain profile. 5 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g01247 452 Gene3D Phosphorylase Kinase; domain 1 1 74 - -
Lsi07g01247 452 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Lsi07g01247 452 PANTHER SERINE/THREONINE KINASE 204 242 - -
Lsi07g01247 452 Gene3D Transferase(Phosphotransferase) domain 1 174 380 - -
Lsi07g01247 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Lsi07g01247 452 SUPERFAMILY Protein kinase-like (PK-like) 3 396 IPR011009 -
Lsi07g01247 452 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 262 441 - -
Lsi07g01247 452 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 204 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01247 K14498 SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1] - csv:101207431 427.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g02054 Lsi-Chr1:28587570 Lsi07g01247 Lsi-Chr7:18215035 3.05E-10 dispersed
Lsi07g01247 Lsi-Chr7:18215035 Lsi01g02051 Lsi-Chr1:28469528 3.79E-26 dispersed
Lsi07g01247 Lsi-Chr7:18215035 Lsi11g01030 Lsi-Chr11:17668923 3.14E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g558 Blo02g01010 . . Bda08g00611 Bpe05g00545 . . . Cmo06g00845 Cmo16g01150 . . . . . Cpe14g00910 . Bhi11g00087 . . . . Mch10g1603 . Cla10g00206 Cam10g0212 Cec10g0217 Cco10g0218 Clacu10g0215 Cmu10g1058 Cre10g0466 . . . . Lsi07g01247 . . Cme06g02518 . . . . . . Bma05g00737 . . . . Cma06g00823 Cma16g01101 . Car16g01042 . . Bhi05g00574 Tan07g1902 . Lac11g2344 Hepe06g1246 . . . . . . . . . . Csa03g00222 Chy06g02099 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83802 PF00069 Pkinase 1.00E-31 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01247 Lsi_Chr07 FPKM 24.738384 26.281029 37.255741 37.297916 13.822972 11.817596 14.35849 64.245598 68.425407 78.647285