Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01258 ATGAGAATTTTTGTGCTTGAATTTGTTGCTGTCAAGCTAAAATATGCACCCCTACCCTCCTGGATTGCAGCATATGTTTTAGAATTTATAATTCATTCGTACAATCCTCAAAGTGTGGAGATCGTCATTATATTGCTGATAGCAGCAAGCAAGAATTCTTCCAATAAGTTTCAGATGCCTGAAAGCATTGAGATCCTAAAGGCAAGAATTGAAACAGGCACACCACTCTGGCGTAATGGGCCTCCTGATAAGCCAGTATTGTGCAATGCCTGTGGATCTCGATGGAGGACAAAGGGAACTCTAGCAAACTATACCCCTCTTCATGCTCGGGCGGATCCTGACGAGTATGAGGATAAAAGGATCTCTAGGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAGTGGAGTTGTGGTTGGGGTTATCCCTGATCATGCTCAGAGCTTTCACAAGGCAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCGAACTCTGAGAGCTGTGCACAATTTGGTGGTGCTGATGCAAGTGATCTGACAGGTCCCTCACAGTCAACAGCGTGGGAGGCAATGGTGCCTTCTAGAAAGAGGACCTGTGTCGGTCGTCCAAAGTCTACTGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAGGATTTGCTTTTTGAGAATGAAACTCCGATGGTCTCCGTAGAGATAGGACATGGAAGCGTTCTCATGAGACATCCAAGTTCAATTGCTCGAGAAGAGGAGTCAGAAGCAAGCTCAATTTCAGTTGATAATAAACAATTCTCTGTAAATGAAGTTCATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTCAGAACAAGGTTGTAAATTTTTCTACTCTTGGGATTGGGAGAAAGCACTCTATTGGACAGGGGTTCATGCAAGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAGAATGCAAGCACTTGGAAATCATAATTCGCCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTACGAAGCAATTGACGAGTGAGAATCAGCAAGAATTAATGAAGTATCTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGCCCTCAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCCGGGGTCAAAAAGAGAGGACTGCAAGACTTTGAGTAGGCTGGTGTTGATGGATTTGTCAAAATCAAAATGGGTGGAACGATATCATTTACTCAAGAAATGTAGTAGTGAAGAGTTTGTTCAAGGTTTTGCTGCTGCATCAAGTAGCTTTATGAATGGCAAGAGAGTGCTTGATGGCCAAAACAAAAAGCTTTCAGAAACATATCCATCTTCAGAAACAAGGACAGCAATGAAGAGCCCCAAAAGGGTGATGACGAAAACAAGCGTGGAAAGCAAGGAACTCGTTGACAGCGACGGTTCTTGCTTCAGTCCAAGGAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTTCACACTGGAATCTCTGCATTTTGATGAGGATAGTTCTGACCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTTCCACAAGCAGAGCTCCTTCATCCAGCCCTGAGTTTTGGTGCTCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCACTGA 1815 42.53 MRIFVLEFVAVKLKYAPLPSWIAAYVLEFIIHSYNPQSVEIVIILLIAASKNSSNKFQMPESIEILKARIETGTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDKRISRWKNLSMCKNKEVKLLKRKQYQDSGVVVGVIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAMVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSVNEVHSESSILPVHYETQNKVVNFSTLGIGRKHSIGQGFMQEQIKRDRPQSERMQALGNHNSPLCNIDLTDILNFREFTKQLTSENQQELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGSKREDCKTLSRLVLMDLSKSKWVERYHLLKKCSSEEFVQGFAAASSSFMNGKRVLDGQNKKLSETYPSSETRTAMKSPKRVMTKTSVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSDQDLLLDVRSNSSFPQAELLHPALSFGAQQASNSSSSVNLRLMHH 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18377431 18383687 - Lsi07G012580.1 Lsi07g01258 667680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01258 604 Pfam Asx homology domain 344 427 IPR028020 -
Lsi07g01258 604 MobiDBLite consensus disorder prediction 169 183 - -
Lsi07g01258 604 Gene3D - 348 432 IPR038108 -
Lsi07g01258 604 Pfam GATA zinc finger 72 100 IPR000679 GO:0006355|GO:0043565
Lsi07g01258 604 SMART GATA_3 67 114 IPR000679 GO:0006355|GO:0043565
Lsi07g01258 604 MobiDBLite consensus disorder prediction 162 183 - -
Lsi07g01258 604 PANTHER GATA TRANSCRIPTION FACTOR 26 72 604 - -
Lsi07g01258 604 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 355 464 IPR044867 -
Lsi07g01258 604 PANTHER OSJNBB0038F03.10 PROTEIN 72 604 IPR044589 -
Lsi07g01258 604 CDD ZnF_GATA 74 110 IPR000679 GO:0006355|GO:0043565
Lsi07g01258 604 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 72 104 - -
Lsi07g01258 604 Gene3D - 70 141 IPR013088 GO:0006355|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01258 - - - cmo:103490848 979.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01258 Lsi-Chr7:18377431 Lsi02g02999 Lsi-Chr2:36081820 6.96E-06 dispersed
Lsi05g00024 Lsi-Chr5:361850 Lsi07g01258 Lsi-Chr7:18377431 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01074 CCT,ECH 101 351 C2C2-Gata Transcription Factor Family AT5G25830 57.0 2.8e-69 259.2
Lsi04g02328 CCT,ECH 39 352 C2C2-Gata Transcription Factor Family AT5G25830 50.9 6.3e-69 258.1
Lsi05g01573 . 2 147 C2C2-Gata Transcription Factor Family AT3G06740 60.4 8.4e-37 150.2
Lsi07g00224 . 21 299 C2C2-Gata Transcription Factor Family AT5G66320 50.5 6.7e-66 248.1
Lsi01g00626 . 105 281 C2C2-Gata Transcription Factor Family AT4G36240 50.8 1.2e-42 170.2
Lsi07g01258 . 72 580 C2C2-Gata Transcription Factor Family AT4G17570 52.2 1.9e-128 456.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25678 PF13919 ASXH 2.80E-09 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01258 Lsi_Chr07 FPKM 0.0 0.0 0.247178 0.0 0.0 0.0 0.0 0.191443 0.0 0.0