Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01258 ATGAGAATTTTTGTGCTTGAATTTGTTGCTGTCAAGCTAAAATATGCACCCCTACCCTCCTGGATTGCAGCATATGTTTTAGAATTTATAATTCATTCGTACAATCCTCAAAGTGTGGAGATCGTCATTATATTGCTGATAGCAGCAAGCAAGAATTCTTCCAATAAGTTTCAGATGCCTGAAAGCATTGAGATCCTAAAGGCAAGAATTGAAACAGGCACACCACTCTGGCGTAATGGGCCTCCTGATAAGCCAGTATTGTGCAATGCCTGTGGATCTCGATGGAGGACAAAGGGAACTCTAGCAAACTATACCCCTCTTCATGCTCGGGCGGATCCTGACGAGTATGAGGATAAAAGGATCTCTAGGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAGTGGAGTTGTGGTTGGGGTTATCCCTGATCATGCTCAGAGCTTTCACAAGGCAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCGAACTCTGAGAGCTGTGCACAATTTGGTGGTGCTGATGCAAGTGATCTGACAGGTCCCTCACAGTCAACAGCGTGGGAGGCAATGGTGCCTTCTAGAAAGAGGACCTGTGTCGGTCGTCCAAAGTCTACTGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAGGATTTGCTTTTTGAGAATGAAACTCCGATGGTCTCCGTAGAGATAGGACATGGAAGCGTTCTCATGAGACATCCAAGTTCAATTGCTCGAGAAGAGGAGTCAGAAGCAAGCTCAATTTCAGTTGATAATAAACAATTCTCTGTAAATGAAGTTCATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTCAGAACAAGGTTGTAAATTTTTCTACTCTTGGGATTGGGAGAAAGCACTCTATTGGACAGGGGTTCATGCAAGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAGAATGCAAGCACTTGGAAATCATAATTCGCCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTACGAAGCAATTGACGAGTGAGAATCAGCAAGAATTAATGAAGTATCTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGCCCTCAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCCGGGGTCAAAAAGAGAGGACTGCAAGACTTTGAGTAGGCTGGTGTTGATGGATTTGTCAAAATCAAAATGGGTGGAACGATATCATTTACTCAAGAAATGTAGTAGTGAAGAGTTTGTTCAAGGTTTTGCTGCTGCATCAAGTAGCTTTATGAATGGCAAGAGAGTGCTTGATGGCCAAAACAAAAAGCTTTCAGAAACATATCCATCTTCAGAAACAAGGACAGCAATGAAGAGCCCCAAAAGGGTGATGACGAAAACAAGCGTGGAAAGCAAGGAACTCGTTGACAGCGACGGTTCTTGCTTCAGTCCAAGGAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTTCACACTGGAATCTCTGCATTTTGATGAGGATAGTTCTGACCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTTCCACAAGCAGAGCTCCTTCATCCAGCCCTGAGTTTTGGTGCTCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCACTGA 1815 42.53 MRIFVLEFVAVKLKYAPLPSWIAAYVLEFIIHSYNPQSVEIVIILLIAASKNSSNKFQMPESIEILKARIETGTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDKRISRWKNLSMCKNKEVKLLKRKQYQDSGVVVGVIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAMVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSVNEVHSESSILPVHYETQNKVVNFSTLGIGRKHSIGQGFMQEQIKRDRPQSERMQALGNHNSPLCNIDLTDILNFREFTKQLTSENQQELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGSKREDCKTLSRLVLMDLSKSKWVERYHLLKKCSSEEFVQGFAAASSSFMNGKRVLDGQNKKLSETYPSSETRTAMKSPKRVMTKTSVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSDQDLLLDVRSNSSFPQAELLHPALSFGAQQASNSSSSVNLRLMHH 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18377431 18383687 - Lsi07G012580.1 Lsi07g01258 667680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01258 604 Pfam Asx homology domain 344 427 IPR028020 -
Lsi07g01258 604 MobiDBLite consensus disorder prediction 169 183 - -
Lsi07g01258 604 Gene3D - 348 432 IPR038108 -
Lsi07g01258 604 Pfam GATA zinc finger 72 100 IPR000679 GO:0006355|GO:0043565
Lsi07g01258 604 SMART GATA_3 67 114 IPR000679 GO:0006355|GO:0043565
Lsi07g01258 604 MobiDBLite consensus disorder prediction 162 183 - -
Lsi07g01258 604 PANTHER GATA TRANSCRIPTION FACTOR 26 72 604 - -
Lsi07g01258 604 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 355 464 IPR044867 -
Lsi07g01258 604 PANTHER OSJNBB0038F03.10 PROTEIN 72 604 IPR044589 -
Lsi07g01258 604 CDD ZnF_GATA 74 110 IPR000679 GO:0006355|GO:0043565
Lsi07g01258 604 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 72 104 - -
Lsi07g01258 604 Gene3D - 70 141 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01258 Lsi-Chr7:18377431 Lsi02g02999 Lsi-Chr2:36081820 6.96E-06 dispersed
Lsi05g00024 Lsi-Chr5:361850 Lsi07g01258 Lsi-Chr7:18377431 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25678 PF13919 ASXH 2.80E-09 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01258 - - cmo:103490848 979.548