Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01266 ATGAGTTTCAAGATGTGTCATGATAACTTCCACGTTCATTCTTTAGAAGAGGCAACGACAGCTGAAGATAGTCTCCTAATATATTGCAAACCAGTTGAACTATACAACATTCTTCATCTTCGTTCCCTTAACAATTTAATTCCTCTGTTGCAGCCTTCCTTTCTTCGACGTTGCTTGTTTTACAAGTTACAAGGTAGGCGAAAAGAGAGACCAATTCGAGAGCATTCATGTAGTGTCCTGGTGACTGAAGAATATCAGGCAGTGAATGTCTCTGTGAAAATTGATGTCTTTAGATCTGAGACTGTAGCAGATGGAGTGGACCCACAACTACAAACCTTCTTCTTCTGGTATTCCAAGACCACGAAAGCGCAAGTTAAAGAACTCTATTCAGAATGGGAATTCTTGGAGATGGACTCACCTGGACCTGCCACAGAAGGCATGCACAAGGGATTTGTCGGGCATAACACTGATGGTTTTTCTCTTCTTTCACTTTACACTTCGTGGATTTTGAATTATATGATCTCAACAATCTGCTTGACAATTCAACTGAAATTAAGTTTGTATTTAGATGGTGTATCCTGTGAAAAAGAGGGGAGCCATTCATTCCCCATTGAGACTTATTTGCAGAATGCACAACAAGACGGAGAAAATATTGGCCCTGAATGTCCTTCCTCTATGGAGTGCATTGAAGGTGTTGCATCCAGCTCAAATATTCCAGGTGTCTCAATGGCTATCAATCAATCTTCGACAGGTCCTGAATGTTATAAAGTACTGTCAAGTGATCATTTACAACCAGCCAAAGCAAGGAAGTTAACAGTAGAACGAGACCCTAGAAACCGCATGCTCCTGCAGAAACGGCAGTTTTATCACTCTCACAGGGTTCAGCCTATGGCTCTAGATAAAGTACTATCCGACAAAGATAGTGAGGACGAAGTAGATGATGACATTGCAGATTTTGAAGACCGAAGGATGCTCGATGATTTCGTGGATGTCACCAAAGATGAAAAGCGGCTTATGCATCTGTGGAACTCCTTTGTTAGAAAGCAAAGGGTGCTAGCTGATGGTCACGTGCCATGGGCATGTGAGGCATTCTCAAAACTTCATGGGAAAGAGCTTATCTCATCTCCGCCTCTCTTTTGGATCTGTGGAGGACATGCAGTAAGCTTTTTACCTCACCGGTGTTGGAGATTATTCATGATCAAGCTCTGGAATCATGGTCTTCTCGATGCCTCTACCATGAACAACTGTAATTTAACTCTTGAAGGATTCAAAGATGAGAGTTTGAATGCGACAAAAAACTGTAGAAGAGATGACGATTAG 1320 41.82 MSFKMCHDNFHVHSLEEATTAEDSLLIYCKPVELYNILHLRSLNNLIPLLQPSFLRRCLFYKLQGRRKERPIREHSCSVLVTEEYQAVNVSVKIDVFRSETVADGVDPQLQTFFFWYSKTTKAQVKELYSEWEFLEMDSPGPATEGMHKGFVGHNTDGFSLLSLYTSWILNYMISTICLTIQLKLSLYLDGVSCEKEGSHSFPIETYLQNAQQDGENIGPECPSSMECIEGVASSSNIPGVSMAINQSSTGPECYKVLSSDHLQPAKARKLTVERDPRNRMLLQKRQFYHSHRVQPMALDKVLSDKDSEDEVDDDIADFEDRRMLDDFVDVTKDEKRLMHLWNSFVRKQRVLADGHVPWACEAFSKLHGKELISSPPLFWICGGHAVSFLPHRCWRLFMIKLWNHGLLDASTMNNCNLTLEGFKDESLNATKNCRRDDD 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18480197 18493533 + Lsi07G012660.1 Lsi07g01266 667688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01266 439 Pfam VEFS-Box of polycomb protein 275 417 IPR019135 -
Lsi07g01266 439 PANTHER POLYCOMB GROUP PROTEIN EMBRYONIC FLOWER 2-RELATED 5 70 - -
Lsi07g01266 439 PANTHER POLYCOMB GROUP PROTEIN EMBRYONIC FLOWER 2-RELATED 77 430 - -
Lsi07g01266 439 PANTHER POLYCOMB GROUP PROTEIN 5 70 - -
Lsi07g01266 439 PANTHER POLYCOMB GROUP PROTEIN 77 430 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00123 Lsi-Chr7:1376816 Lsi07g01266 Lsi-Chr7:18480197 1.06E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01266 - - csv:101204149 616.69