Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01273 ATGATGTATGAACAGAGTAATGGCTGTGAATCCGATTTTGTTCTTCTGGAAACCATACGGCGCCATTTATTGGGAGAATCCGACGCTTACCGTTGTGGGAATTTCGCCCTTGCCGGAACTGCCTCGCCGGTTTTCTGCCGGAGCTCTAGTTTCGGCAGCTTGTACCCTTGTTTGACTGAAAATTGGGGCGATTTGCCTCTTAAAGAAGATGATTCCGAGGACATGGTTCTCGCCGGCGTCCTCCGTGATGCTGTCAGCGTCGGTTGGGTTCCGTCGCTCGGCACTTCCCCGTCGGATACGTTCAATTTTGGATTCTCCGATGTCAAGCCGGAGCCGGAGATTCTCCCGCCGGTGAACATCTTGCCGGAAATTAAGGTGGCGGCGACGGCGGCGACACCGTTGCCGGCGGTGGTTCCGGCGAAGGGGAAGCATTACCGGGGTGTTCGGCAGCGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGAGACCCGGCGAAAAACGGGGCTCGGGTTTGGCTTGGAACTTTTGAAACGGCGGAGGACGCGGCGCTTGCTTATGACCGCGCCGCTTATCGGATGCGTGGCTCCAAAGCTCTTCTCAATTTCCCACTTCGAGTGAATTCGGGCGAACCCGACCCGGTTAGAGTGACGTCGAAGCGGTCGTCACCTCGTTCTTCGCCGGAGCCTACTTCGTCGTTGTCGTCGGTAGAAAGTGGGTCCCCTAAGCGACGGAAGAAGGCGGTGGCACCCGCTCTAGCTGCGCCGGAGTTAATTCAATTGGTGGTGGGGACCAATGGATTGCAAGTGGAAACTGACGTGGCAAAGTGTACAAGTGGCGAGAAATGA 843 56.94 MMYEQSNGCESDFVLLETIRRHLLGESDAYRCGNFALAGTASPVFCRSSSFGSLYPCLTENWGDLPLKEDDSEDMVLAGVLRDAVSVGWVPSLGTSPSDTFNFGFSDVKPEPEILPPVNILPEIKVAATAATPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSLSSVESGSPKRRKKAVAPALAAPELIQLVVGTNGLQVETDVAKCTSGEK 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18538813 18539655 - Lsi07G012730.1 Lsi07g01273 667695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01273 280 SUPERFAMILY DNA-binding domain 144 204 IPR016177 GO:0003677
Lsi07g01273 280 SMART rav1_2 144 208 IPR001471 GO:0003700|GO:0006355
Lsi07g01273 280 MobiDBLite consensus disorder prediction 208 249 - -
Lsi07g01273 280 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 41 256 - -
Lsi07g01273 280 Gene3D AP2/ERF domain 143 205 IPR036955 GO:0003700|GO:0006355
Lsi07g01273 280 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Lsi07g01273 280 PRINTS Ethylene responsive element binding protein signature 168 184 IPR001471 GO:0003700|GO:0006355
Lsi07g01273 280 MobiDBLite consensus disorder prediction 213 237 - -
Lsi07g01273 280 CDD AP2 143 202 IPR001471 GO:0003700|GO:0006355
Lsi07g01273 280 PANTHER DNA-BINDING DOMAIN 41 256 IPR044808 GO:0003700|GO:0009873
Lsi07g01273 280 Pfam AP2 domain 144 194 IPR001471 GO:0003700|GO:0006355
Lsi07g01273 280 ProSiteProfiles AP2/ERF domain profile. 144 202 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01725 Lsi-Chr5:24698937 Lsi07g01273 Lsi-Chr7:18538813 3.41E-31 dispersed
Lsi07g01273 Lsi-Chr7:18538813 Lsi09g00489 Lsi-Chr9:5126546 5.67E-30 dispersed
Lsi07g01273 Lsi-Chr7:18538813 Lsi07g01274 Lsi-Chr7:18569260 1.49E-30 tandem
Lsi07g01273 Lsi-Chr7:18538813 Lsi09g00458 Lsi-Chr9:4842956 7.12E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25679 PF00847 AP2 1.20E-14 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01273 K09286 - csv:101203663 437.573