Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01277 ATGACAAAAGAATGTATTGTATTGTTATCACTCCTCGAATGCATTGTAATGCCATTTTTTTTTCTTCAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCCGATGTTCCCCGTTTGAAGGAGGTTGGTGTTCGAGGAGTGATAACACTAAATGAGCCATATGAGACTTTGGTTCCTTCAACTCTATATCGTGATCATGGAATTGATCATCTGACCATTCCGACAAGAGACTATTGTTTTGCACCTTTATTGAGTGACATTTGCACTGCTGTAAATTTCATCCACAAAAATGCATCACATGGACAGACTACATATGTTCATTGTAAAGCTGGACGAGGGCGTAGCACAACCATCGTTATTTGCTATTTGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTATAAGCATGTGAAATCAATCAGGCCAAGGGTGCTTTTAGCATCATCACAGTGGCAGGCTGTCCTGGAATTTTACCACCTGATTGTGCAGAAGGATGTTTCCTTCTGCCACATAGATGATCTAGGAAAGGAAGTATCAGGATCATTGCATGATCTTATCGCATTCGATGATGGTTCTGTAGTTGTTGTAAAAGAATCCGATCTTGATGGATATGACCAAAGTATCAGCAAAAGTGACATGGGTGATATCTGGGCAGATTTAAGTGTAGTCTGCAGGGTTCGTGTTGCTGGTCAGGCAGCCCTCACAAGAATCTCTTGTTTGTGGCTTAGCTATCGAGCAAAACACCATAGCCAGAAGATTTCAGGAGATGATCACGGCGTCGGGAAGGGTTGTTCACTTAGTGCTACTCATTTGGAAGGGTTCAGTGTGGACATCCATGTCTATTAA 849 41.93 MTKECIVLLSLLECIVMPFFFLQFILLGAVPFPADVPRLKEVGVRGVITLNEPYETLVPSTLYRDHGIDHLTIPTRDYCFAPLLSDICTAVNFIHKNASHGQTTYVHCKAGRGRSTTIVICYLVQYKQMTPDEAYKHVKSIRPRVLLASSQWQAVLEFYHLIVQKDVSFCHIDDLGKEVSGSLHDLIAFDDGSVVVVKESDLDGYDQSISKSDMGDIWADLSVVCRVRVAGQAALTRISCLWLSYRAKHHSQKISGDDHGVGKGCSLSATHLEGFSVDIHVY 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18609281 18614376 - Lsi07G012770.1 Lsi07g01277 667699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01277 282 PANTHER - 23 282 - -
Lsi07g01277 282 SMART dsp_5 17 161 IPR020422 GO:0006470|GO:0008138
Lsi07g01277 282 Gene3D Protein tyrosine phosphatase superfamily 21 167 IPR029021 -
Lsi07g01277 282 Pfam Dual specificity phosphatase, catalytic domain 57 159 IPR000340 GO:0008138|GO:0016311
Lsi07g01277 282 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 23 282 - -
Lsi07g01277 282 CDD PTPMT1 23 159 IPR044596 GO:0004721
Lsi07g01277 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 23 163 IPR029021 -
Lsi07g01277 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 12 164 IPR020422 GO:0006470|GO:0008138
Lsi07g01277 282 ProSitePatterns Tyrosine specific protein phosphatases active site. 106 116 IPR016130 GO:0016311|GO:0016791
Lsi07g01277 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 85 153 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01038 Lsi-Chr4:12179322 Lsi07g01277 Lsi-Chr7:18609281 2.82E-07 dispersed
Lsi07g01277 Lsi-Chr7:18609281 Lsi11g00210 Lsi-Chr11:2164830 3.51E-76 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01277 - - csv:101222975 502.671