Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01279 ATGATGGCTGGGAAAGATGATAATCTTGGTTTAAGCCTTGGATTGAGCTTTGATTCTCATCATTTACAGCTCAATCTCATGCCTTCTTCTTGGAATAACGATACTTCTTCAGATCGGACATCGGAAACAGGGCGATCGCTTCTCCGAGGCATCGATGTGAACAGGATGCCGCCGTCGTCGACGGCGGATTGTGAAGAGGAGGCGGCGATGTCGAGTCCTAACAGTACGGTTTCGAGTGTGAGTGGGAAACGGAGTGAACGAGAGATGAACGGCGAAGATCTGGACGGCGATAGAGCTTGTTCTAGAGGAATTAGTGATGAAGAAGACGGTGAAACTTCTAGAAAAAAACTTCGCCTCACTAAAGATCAGTCCGCCGTCTTGGAAGAAAGCTTCAAAGAACACAACACTCTCAATCCTAAGCAAAAGTTAGCGTTGGCGAAACAATTGGGTTTACGGCCGAGACAAGTCGAAGTCTGGTTCCAAAACAGAAGGGCAAGGACAAAATTGAAGCAAACGGAAGTAGATTGCGAGTTTCTAAAGAGATGTTGTGAGAATCTAACGGAGGAGAATAGGCGGTTGCAAAAAGAAGTACAAGAACTGAGAGCACTGAAACTTTCCCCACAGTTCTACATGCACATGACCCCACCTACCACTCTCACCATGTGCCCTTCATGTGAGCGAGTCGCGGTCCCACCCTCCACGTCAGCCCAACCTACAGTCACACGAATGGGCCAAGCCCAACCTCAGGCCCACCACGCTCGGCCCATCCACATCAACCCATGGGCCTCCGCTATCCCCGCCCGGCCCTTCAACGCCCTCCACCCTCGCTCGTAA 834 50.48 MMAGKDDNLGLSLGLSFDSHHLQLNLMPSSWNNDTSSDRTSETGRSLLRGIDVNRMPPSSTADCEEEAAMSSPNSTVSSVSGKRSEREMNGEDLDGDRACSRGISDEEDGETSRKKLRLTKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSTSAQPTVTRMGQAQPQAHHARPIHINPWASAIPARPFNALHPRS 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18633125 18635584 - Lsi07G012790.1 Lsi07g01279 667701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01279 277 SMART halz 170 213 IPR003106 GO:0006355|GO:0043565
Lsi07g01279 277 Coils Coil 169 206 - -
Lsi07g01279 277 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677
Lsi07g01279 277 Gene3D - 120 166 - -
Lsi07g01279 277 MobiDBLite consensus disorder prediction 65 84 - -
Lsi07g01279 277 CDD homeodomain 114 171 IPR001356 GO:0003677
Lsi07g01279 277 PRINTS Lambda-repressor HTH signature 150 166 IPR000047 GO:0003677
Lsi07g01279 277 PRINTS Lambda-repressor HTH signature 141 150 IPR000047 GO:0003677
Lsi07g01279 277 PANTHER - 6 268 - -
Lsi07g01279 277 Pfam HD-ZIP protein N terminus 2 88 IPR006712 GO:0005634
Lsi07g01279 277 MobiDBLite consensus disorder prediction 29 44 - -
Lsi07g01279 277 SMART HOX_1 112 174 IPR001356 GO:0003677
Lsi07g01279 277 Pfam Homeobox associated leucine zipper 170 204 IPR003106 GO:0006355|GO:0043565
Lsi07g01279 277 MobiDBLite consensus disorder prediction 29 116 - -
Lsi07g01279 277 SUPERFAMILY Homeodomain-like 103 171 IPR009057 -
Lsi07g01279 277 Pfam Homeodomain 114 168 IPR001356 GO:0003677
Lsi07g01279 277 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981|GO:0006355
Lsi07g01279 277 MobiDBLite consensus disorder prediction 85 116 - -
Lsi07g01279 277 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 6 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02612 Lsi-Chr2:32506859 Lsi07g01279 Lsi-Chr7:18633125 1.31E-72 dispersed
Lsi03g01746 Lsi-Chr3:28845899 Lsi07g01279 Lsi-Chr7:18633125 5.79E-71 dispersed
Lsi05g00810 Lsi-Chr5:12236738 Lsi07g01279 Lsi-Chr7:18633125 3.49E-67 dispersed
Lsi05g02181 Lsi-Chr5:28450834 Lsi07g01279 Lsi-Chr7:18633125 2.57E-108 dispersed
Lsi06g01229 Lsi-Chr6:22684196 Lsi07g01279 Lsi-Chr7:18633125 5.72E-54 dispersed
Lsi07g01279 Lsi-Chr7:18633125 Lsi05g00818 Lsi-Chr5:12772727 1.99E-21 dispersed
Lsi07g01279 Lsi-Chr7:18633125 Lsi01g00857 Lsi-Chr1:6862407 6.62E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25681 PF04618 HD-ZIP_N 1.10E-20 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01279 K09338 - csv:101223208 470.7