Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01282 ATGGAAGATCCTCTTCACAGATTCCAATTTCACTCTCAATCTTCTTCTTCTTCATCTTCTTCTTCTTCTTCTTCTTCATCAGATATCAAAAATTGTATCAAAGAAAAAAACTCCAAGAAACTTAAACTCGTAAACGACGGCAAACATCCTACCTATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGCACATTTTCCACGCCGGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACTATCAAAGGTAATTCCGCTTACCTTAACTTCCCTGAATTAGCTCATCGTCTCCCTCGTCCTGCTAGTTCTTCTCCTAAAGACATTCGAGCTGCTGCCGCTAAAGCCGCTTCGTTTTCCACTAATAATCTCCTCGATTCAACTCACGATGATGAACACAACGGCGCCGTGAAATCTGACCTCAATCTCAATCGTTCTCCTTCCTCCACCATTGCTGCGAAATCGTCAGGTGAAATTGACGATCCTTTCTTCGATCTCCCCGATCTGTTCCTTGATGATCCCAATCATCAAATTGATACATTCTGTTTCTCGCAAGTTCTTCCAATTGACGGTTTCGACTCTGTTTTTACACGGCCGCCGTCGCCGTCTCCGTCGTCTGATTATTTCGCTTACAGAGGTAGCCTACTCTAG 699 45.06 MEDPLHRFQFHSQSSSSSSSSSSSSSSDIKNCIKEKNSKKLKLVNDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGNSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTNNLLDSTHDDEHNGAVKSDLNLNRSPSSTIAAKSSGEIDDPFFDLPDLFLDDPNHQIDTFCFSQVLPIDGFDSVFTRPPSPSPSSDYFAYRGSLL 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18716823 18717521 + Lsi07G012820.1 Lsi07g01282 667704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01282 232 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Lsi07g01282 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 199 - -
Lsi07g01282 232 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677
Lsi07g01282 232 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700|GO:0006355
Lsi07g01282 232 MobiDBLite consensus disorder prediction 155 171 - -
Lsi07g01282 232 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Lsi07g01282 232 MobiDBLite consensus disorder prediction 140 172 - -
Lsi07g01282 232 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Lsi07g01282 232 MobiDBLite consensus disorder prediction 1 32 - -
Lsi07g01282 232 MobiDBLite consensus disorder prediction 8 31 - -
Lsi07g01282 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 14 199 - -
Lsi07g01282 232 Pfam AP2 domain 50 100 IPR001471 GO:0003700|GO:0006355
Lsi07g01282 232 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Lsi07g01282 232 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02189 Lsi-Chr5:28515186 Lsi07g01282 Lsi-Chr7:18716823 5.84E-41 dispersed
Lsi07g01282 Lsi-Chr7:18716823 Lsi08g01086 Lsi-Chr8:19470778 7.64E-42 dispersed
Lsi07g01282 Lsi-Chr7:18716823 Lsi11g00240 Lsi-Chr11:2429121 1.44E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25683 PF00847 AP2 9.20E-13 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01282 - - csv:101222736 333.569