Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01289 ATGGAAGATTTTGCAATAATGAGTGGGTTGGTTGGAGTGCAATTTGTATATGCAGGGAACTCTGTTTTTATGAGTTTTCTTATGTCTTTGGGAATTGATCCTTTAACTCTTGTCATTTTCTCTACCTTCTCCACTTTTCTCATTGTCTCTCCCATTGCTGTTTATTTTGAAAGGCATAACTGGCCAAAGAAACTTACTCTAAAGTTGATTCTTCAACTTCTTCTCATATCCTTTGGAGGGGTTACATTGTTTCAGTCCCTTTTTTTGAAAGGAATACAGCTAACTTCGCCGACTTTAGCTACGGCGATGCCGAATCTCGCCCCGGGACTCATCTTTGCCATTGCTTGGATCTTTAGATTAGAAAAAGTTCAGCTAAGCTGCATCTATAGCAAGATCAAGATTTTAGGTACATTGCTATGTGTGGTAGGCGCGTTCACCATGAGCATAATGCACAGCGCGTCGTCGGATGCAGCTGCAAAAGATAATATCCCACGAGAATCACCTCCGGCCGAGCAAGTGTTCGATGAACAGAAGATCCTTGGTTGCATGTATCTCTTCTCGGCGATCATCGTTTTATCTAGCATAGTTGTTCTGCAGGCATCGACACTAGGTGATTTCCCGGCACCGATGTCGTTGTGTGCGATAACGTCCCTCATCGGAGTGCTCTTAACCATAGGTGTACATATAATTCAATATCAGAAACTGGACATTGGTTGGCCACTTCTCAGTGCTAAAGAATTGGCTGCCTATTTTGTTCTAGTAAGCAGCATTCAATTCTTTGCTCTTTTGAGATCATTCTTTGTACATATTGTGTGCATATTGATGTATCCTTTTATAAATGTTGGTGTCGAAAAGGGCGGAACTATTAGCGGCGCTTGCGTGAGCTTCAACGGATGGGCAATGAAGAAACGAGGGCCGGTTTTAGTGTCGATGTTTAGCCCGATCGGAACTGTTTGCTCAGTCATTCTCTCAGTTTTCACCTTGGGAGAATCCATCAACATTGGGAGCCTTGCTGGTATGTTCCTCATGTTCACCGGCCTCTACTTCGTCCTGTGGGCGAAAGGGAAGGAACGTTACGCCAACCGAAACCGTCCCGAGAGTGAGTTCGACGTTGACAAGCCTCTTTTAAGTTGA 1134 44.0 MEDFAIMSGLVGVQFVYAGNSVFMSFLMSLGIDPLTLVIFSTFSTFLIVSPIAVYFERHNWPKKLTLKLILQLLLISFGGVTLFQSLFLKGIQLTSPTLATAMPNLAPGLIFAIAWIFRLEKVQLSCIYSKIKILGTLLCVVGAFTMSIMHSASSDAAAKDNIPRESPPAEQVFDEQKILGCMYLFSAIIVLSSIVVLQASTLGDFPAPMSLCAITSLIGVLLTIGVHIIQYQKLDIGWPLLSAKELAAYFVLVSSIQFFALLRSFFVHIVCILMYPFINVGVEKGGTISGACVSFNGWAMKKRGPVLVSMFSPIGTVCSVILSVFTLGESINIGSLAGMFLMFTGLYFVLWAKGKERYANRNRPESEFDVDKPLLS 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18831423 18833992 + Lsi07G012890.1 Lsi07g01289 667711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01289 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 285 356 - -
Lsi07g01289 377 Pfam EamA-like transporter family 11 148 IPR000620 GO:0016020|GO:0016021
Lsi07g01289 377 PANTHER OS11G0588100 PROTEIN 7 377 - -
Lsi07g01289 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 148 - -
Lsi07g01289 377 PANTHER WAT1-RELATED PROTEIN 7 377 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01289 Lsi-Chr7:18831423 Lsi02g01668 Lsi-Chr2:22494244 1.83E-36 dispersed
Lsi07g01289 Lsi-Chr7:18831423 Lsi08g01356 Lsi-Chr8:21887221 1.81E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01289 - - cmo:103490881 579.711