Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01302 ATGGCTTCCCCTGTTTTTGTTTTCCTCCTCTGTTTTCTCCTCTCTTCCCCTGTTTTCTCCTCACAAATTCTCCTTCTACCTCTCTCCCATTCCTTATTATCCTCAATATCAGATTTCAACAACACCCACAACCTCCTCAAATCCACCGCTGCCCGCTCCTCCGCCAGATTCCACCACCACCGCCGTGCCCACCACCGTAACCACCTCTCTCTTCCCCTCTCCCCTGGCGGCGATTACACTCTCTCCTTCAACCTCGGCTCTGAGTCTCACAAAATTTCCCTCTATATGGACACTGGCAGCGACCTTGTTTGGTTCCCCTGTTCCCCGTTTGAATGTATTCTTTGTGAAGGCAAACCGAAAATTCAATCCCCTTTGCCCAAAATCTCAAATAATAAATCAGTTTCCTGCAGCGCCGCCGCCTGCTCTGCCGCCCATGGTGGCTCCCTCTCCGCCTCCCACCTCTGTGCAATTTCTCAGTGTCCACTTGAATCCATTGAAATTTCCGAGTGCTCCTCTTTTTCCTGTCCCCCGTTTTATTATGCTTACGGCGATGGGAGTTTAATTGCTCGGCTTTATAGAGATAGCCTCAGTTTGCCGGCGCCGGCGCCGTCACCGGCGATTAATGTTCGGAATTTTACTTTTGGGTGTGCCCACACGACGCTCGGCGAGCCGGTTGGGGTCGCCGGATTCGGCCGGGGGACGTTGTCGATGCCGAGTCAACTCGCCACTTTCTCCCCCCAACTTGGGAACCGGTTTTCTTATTGTTTGGTTTCTCACTCGTTTGCCGCGGACCGAGTTCGCCGTCCGAGTCCGCTGATTCTCGGCCGGTACTTCGGCGGCGAGACAGAGTTCGTTTACACTTCCTTGCTTGAGAATCCGAAACATCCTTATTTTTACTCGGTTGGGTTGGCCGGAATTTCAGTCGGGAATGTGAGGATTCCGGCGCCGGAGTTTTTGAAAAAAGTGGATGAGGGTGGTAGCGGCGGCGTTGTGGTGGATTCCGGCACTACTTTCACTATGCTGCCGGCAGGTTTGTATGACTCGGTGGTGGCTGAATTTGAGAATCGGACCGGAAAAGTTGCGAACCGGGCGAGACGGATTGAAGAAAATATCGGGTTGAGCCCTTGCTATTACTACGAGAACTCAGTTGAAGTGCCACGTGTCGTGTTGCATTTCGTTGGGGAGAAATCGAGTGTGGTGCTTCCTAGGAAGAATTATTTCTATGAGTTTGTGGACGGTGGAGATGGGGTTGGGAGGAAGAGAAAAGTTGGGTGTTTGATGCTGATGAACGGTGGGGATGAGGCTGAGTTGGCAGGTGGGCCCGGGGCCACGCTTGGGAACTACCAACAACAGGGTTTTGAAGTAGTTTATGATTTGGAAAATAACCGGGTCGGGTTCGCCCGGCGGCAGTGCTCAACTCTTTGGGACAGCTTGAACCGGAGTTAG 1446 52.56 MASPVFVFLLCFLLSSPVFSSQILLLPLSHSLLSSISDFNNTHNLLKSTAARSSARFHHHRRAHHRNHLSLPLSPGGDYTLSFNLGSESHKISLYMDTGSDLVWFPCSPFECILCEGKPKIQSPLPKISNNKSVSCSAAACSAAHGGSLSASHLCAISQCPLESIEISECSSFSCPPFYYAYGDGSLIARLYRDSLSLPAPAPSPAINVRNFTFGCAHTTLGEPVGVAGFGRGTLSMPSQLATFSPQLGNRFSYCLVSHSFAADRVRRPSPLILGRYFGGETEFVYTSLLENPKHPYFYSVGLAGISVGNVRIPAPEFLKKVDEGGSGGVVVDSGTTFTMLPAGLYDSVVAEFENRTGKVANRARRIEENIGLSPCYYYENSVEVPRVVLHFVGEKSSVVLPRKNYFYEFVDGGDGVGRKRKVGCLMLMNGGDEAELAGGPGATLGNYQQQGFEVVYDLENNRVGFARRQCSTLWDSLNRS 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18987195 18988640 + Lsi07G013020.1 Lsi07g01302 667724

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01302 481 SUPERFAMILY Acid proteases 74 476 IPR021109 -
Lsi07g01302 481 Gene3D Acid Proteases 58 264 IPR021109 -
Lsi07g01302 481 Pfam Xylanase inhibitor C-terminal 299 467 IPR032799 -
Lsi07g01302 481 PANTHER BNAA01G17170D PROTEIN 1 476 - -
Lsi07g01302 481 PANTHER OS07G0603500 PROTEIN-RELATED 1 476 - -
Lsi07g01302 481 CDD pepsin_A_like_plant 79 471 IPR034161 -
Lsi07g01302 481 Pfam Xylanase inhibitor N-terminal 79 259 IPR032861 -
Lsi07g01302 481 Gene3D Acid Proteases 278 477 IPR021109 -
Lsi07g01302 481 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 330 341 IPR001969 GO:0004190|GO:0006508
Lsi07g01302 481 ProSiteProfiles Peptidase family A1 domain profile. 79 467 IPR033121 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01302 - - - csv:101219587 821.231
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01187 Lsi-Chr1:10101067 Lsi07g01302 Lsi-Chr7:18987195 4.00E-44 dispersed
Lsi02g01021 Lsi-Chr2:10626070 Lsi07g01302 Lsi-Chr7:18987195 6.31E-58 dispersed
Lsi07g01302 Lsi-Chr7:18987195 Lsi09g00601 Lsi-Chr9:6530015 3.03E-38 dispersed
Lsi07g01302 Lsi-Chr7:18987195 Lsi03g01843 Lsi-Chr3:29870684 1.22E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g535 Blo02g01043 Blo03g00160 Bda06g00028 Bda08g00578 Bpe05g00581 Bpe07g00178 . . . Cmo16g01192 . . . . Sed04g1715 Cpe14g00944 . Bhi11g00193 Tan01g2028 Cmetu06g1269 . . Mch10g1562 . Cla10g00257 Cam10g0263 Cec10g0271 Cco10g0269 Clacu10g0265 Cmu10g1108 Cre10g0516 Cone8ag0396 . Cone6ag0672 Cone9ag0679 Lsi07g01302 . . Cme06g02571 . . . . . . . Bma12g00644 . . . . Cma16g01140 . Car16g01075 . . . . . . . . . . . . . . . . . Csa03g00275 Chy06g02047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010679 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01302 Lsi_Chr07 FPKM 0.041311 0.09446 0.0 0.0 0.0 0.0 0.0 0.034302 0.047113 0.028515