Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01303 ATGGATATCGTCGTGTCGAAAGGCAGCAGTAGCGGAGATGGGGAACTCCCATCGAGTTCGAAGACGAAGAATGTATACCCTCCCATTGAATCTTTCTGGCTACCGCCTTCAGCAGCAGAAACGGCGATGGATGTCCCGAAGGGCGGAGGCCTCGGCTCGAAGCTACTTCAACCGTTGAGGTTTCGGAGATCGTCAAAAAGAAGCTTGAAGATGGCAATGGAAGGGAAACATGATCCAAAGGAAGAAGAAGCTGTTGATATATTAAGGGAAATACTTTTTCTTGATGGTCAATTGCCAACCAAATTCAATGATTATCATACTCTTCTTAGATTCCTTCGGATGAGAGATTTTGATACTGAAGCAGCAAAAGACATGTTTTTGAAATTCATCAAATGGCGAGAGGATTTTAGAATCGATACAATTTCAAAGACACTAAATCGATTATTTATAATCAATGCTGGATCAGGTTTTAAGATATTATGGAAAGCACTTAGGGCATTTCTTGATGCTCGCACATTAGCTAAGATTCATGTTATCTCTTCAGCTGATGAAACTTATGATAATGAAGAAGAAAGTGGTTTGGCTTCAGAAGATGCCTTGTTAGACAATGGAAAAATCCAAGCCTTGGAAGAAGCATTAGCAGAGACCAAGACTAAAATTGAGGCATTAGAAACAGCACTTGAAGATACCAAAGTGGTGACTTTCCAAAAATCTCCATCAATGGCTTCTTCGATCGCTCTCCGAAGGCTTGCCGCTTCCTCCGCCGCTAGGCTTTTCAATCCTGTTCGCTCCGCCTCTGTTCTCCCCTCTGTCGGTCGTTCATTCAACACTAATGCTCAGATGACCAACTACGACGATGACGACCGCTCCGTCGATGTTGACCGCCGCTCCGACCGCTCTCTTGCTCGATCTCGTGATCGCTTCCCTGGTTTCGCAGATGTGTTCGATCCGTTTTCTCCGACTAGGAGCCTGAGCCAGGTGCTGAATCTGATGGATCAGTTCATGGAGGATCCGTTTCTGGCAGCTTCACGAGGAGTAGGAGCAGGATCAAGGAGGGGCTGGGACGTGAGAGAAGACGACAATGCCCTGTATCTACGAATGGACATGCCTGGACTGAGCAAAGACGACGTGAAGGTGAGTGTGGAGCAGAACACACTGATCATCAAAGGCGAGGCAGCAAAAGAATCCGAAGACGAGGAGGATCGCAGACGATTCTCAAGCCGACTCGATTTGCCTGCAAATCTCTACGAACTGAATTCGATCAAAGCAGAGATGAAAAATGGGGTTCTGAAAGTGGCTGTGCCAAGGGTGAAGGAAGAAGAGAGGAAGGATGTGAAGCATGTTACTGTTGAGTAG 1356 46.31 MDIVVSKGSSSGDGELPSSSKTKNVYPPIESFWLPPSAAETAMDVPKGGGLGSKLLQPLRFRRSSKRSLKMAMEGKHDPKEEEAVDILREILFLDGQLPTKFNDYHTLLRFLRMRDFDTEAAKDMFLKFIKWREDFRIDTISKTLNRLFIINAGSGFKILWKALRAFLDARTLAKIHVISSADETYDNEEESGLASEDALLDNGKIQALEEALAETKTKIEALETALEDTKVVTFQKSPSMASSIALRRLAASSAARLFNPVRSASVLPSVGRSFNTNAQMTNYDDDDRSVDVDRRSDRSLARSRDRFPGFADVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDNALYLRMDMPGLSKDDVKVSVEQNTLIIKGEAAKESEDEEDRRRFSSRLDLPANLYELNSIKAEMKNGVLKVAVPRVKEEERKDVKHVTVE 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18989151 19012743 + Lsi07G013030.1 Lsi07g01303 667725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01303 451 Pfam Hsp20/alpha crystallin family 355 450 IPR002068 -
Lsi07g01303 451 Gene3D - 311 450 IPR008978 -
Lsi07g01303 451 Pfam CRAL/TRIO domain 113 184 IPR001251 -
Lsi07g01303 451 CDD SEC14 124 185 IPR001251 -
Lsi07g01303 451 SUPERFAMILY CRAL/TRIO N-terminal domain 73 142 IPR036273 -
Lsi07g01303 451 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 241 451 IPR044656 -
Lsi07g01303 451 SUPERFAMILY HSP20-like chaperones 321 444 IPR008978 -
Lsi07g01303 451 Coils Coil 206 233 - -
Lsi07g01303 451 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 345 451 IPR002068 -
Lsi07g01303 451 Gene3D - 60 136 - -
Lsi07g01303 451 PANTHER HEAT SHOCK 22 KDA PROTEIN, MITOCHONDRIAL-LIKE 241 451 - -
Lsi07g01303 451 MobiDBLite consensus disorder prediction 11 26 - -
Lsi07g01303 451 MobiDBLite consensus disorder prediction 1 27 - -
Lsi07g01303 451 Gene3D - 142 194 IPR036865 -
Lsi07g01303 451 SUPERFAMILY CRAL/TRIO domain 127 181 IPR036865 -
Lsi07g01303 451 CDD ACD_sHsps-like 355 436 - -
Lsi07g01303 451 SMART CRAL_TRIO_N_2 104 129 IPR011074 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01303 K13993 HSP20; HSP20 family protein - csv:101219106 315.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00644 Lsi-Chr4:5902054 Lsi07g01303 Lsi-Chr7:18989151 1.80E-22 dispersed
Lsi07g01303 Lsi-Chr7:18989151 Lsi04g00934 Lsi-Chr4:9643838 2.19E-13 dispersed
Lsi07g01303 Lsi-Chr7:18989151 Lsi10g00390 Lsi-Chr10:5923363 6.37E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g533 . . . Bda08g00575 . . . . Cmo06g00800 Cmo16g01193 . . . . Sed04g1717 . . Bhi11g00196 Tan01g2027 Cmetu06g0652 . . . . . . . . . . . . . . . Lsi07g01303 . . Cme06g02574 . . . . . . . . . . . Cma06g00780 . Car06g00694 . Cpe08g00743 . . . . . . . . . . . . . . . . Csa03g00277 Chy06g02045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002899 1 4 2 2 1 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 1 1 1 2 1 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01303 Lsi_Chr07 FPKM 2.682796 0.0 1.089352 1.090776 4.384935 2.977395 2.983872 1.218707 1.165233 2.267995