Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01305 ATGGTGGAAACCCTTTGGAATATTGTTTTTGTTGTTGTTCATTTCTTGTTTGGCGACCTGGGGAAGGGGGAGTTGGAATTTTCAGCCGCTTTTTCTTCTTCTCCGATTTGCTCTGGTTTTGCAGAAAAGTGGGTTAAGAAAGGGGAAGAACAACAAGAACAAGAACAAGAAGTAGAAGAAGAACAAGAAGAAGGGCTTTCTTATTTTGTTTTACCCAACAACGAACCCACTTCCGTTCTTCATATGAGAAGCCCCAGTCCTCCCACATCGGCTTCCACTCTCTCTTCTTCCTTTGGTGGCGGTGGCGGTGGCGGTGGTTGTGTTCCTTCGCTTCCTCCGGAGACTCCTGCTGTTGAACCGGTCGCCGGAGCTGGTGTTGGGAACGCCATTTTTCCAGGTGGATTGGAGCGATATGGGGTTGGTTTGGAAGATTTGGAGAGTATGTGGTCGGAAACAGCCGGCCCAGAACAGTCGTTTCTCCGATGGATCGCCGGAGATGTTGTTGAAGATCCCAGTCTAGGAAGTAAAAGTGTTTTGCAAAATGGGAATATACCCTTTGATTTGGATGGCAATGCCGGTATCGGAATCGTTGATCAGGGTTCCGAATTCGAAACCAGTGCTGGTAATGTTCTCGCCAATATTAATCCTAATTTATCGTTTCCTCTTGCTGCTTGTGCTGGGTTTCCTGATGTTAATAATGTTAACAATAAGTCTTCTAGTAGAAGCACTTGTGGGGGGGTTGTTAATTACAGGAGTTCAAGTTTGGGTTTGAACAATCGCCATGGGAATTTCAATGTTCATAACCCTATCTTTACTGGGTCTCTTGAAAATCTTGTTGTTCCTGTTTCTGGTATGATTTATCCTCAGCAGCTTCAGCCATTTGAGAGCCCTGATGAGAAGCCTCAGAATTTGAGTACTCAGGTTTTGTTGAACCAACATCAGCAGCCTCAGAACCCTAGCTTTTTTGTGCCATTGACGTTTGGTCAACAGGAACAGCAGCTCCAGCCTCAACTGAAGAGGCACAATTCGAGTGGAGGACTCGACCCCAACCCAAACGGGCAGATCCCGAAAGTTCCGTTTATGGATCCAGGGAATGAGATTTTTCTGAGGAATCATCAGTTGCAGGTTCTGCAACAGCAGCAGCAGCAGCAGCTTGGTTATCCACCGGGTTTGCAGTTTCTTCCTCAGCAGAAGGCAATGTCGCCGAAGCCGAAAGTTATAGGGCTCGGCGACGAAGTGGCGTATCACAATCCCCCACAGCAACAGCATCAGCATCAGCAACATGCTTTGCTCGACCAGCTCTACAAGGCAGCAGAGCTGGTAGGGACTGGGAATTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTGTTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGCTCCTCCTTATGAACAACCCAGTTAATCCTCCTCCACCTCGCTGCCCGACACCGTTTGATGTGATCTTCAAGATGGGTGCTTACAAGGTGTTTTCTGAAATCTCCCCACTCATTCAGTTTGTGAATTTCACCTGCAACCAGGCACTGCTTGAGGCCCTCGATGACGTTGATCGAATTCACATTGTAGATTTCGATATTGGTTTTGGAGCTCAGTGGGCTTCTTTTATGCAGGAACTGTCCTTGAGGAACCGGGGTGCACCATCGCTCAAAATCACTGCTTTTGCCTCCCCCTCAACTCATCATCAAACTGAACTCGGGCTTATGCGCGAAAATCTCACTCAATTTGCTAATGACATTGGAATAAGTTTTGAGTTCGAAGTGGTTAACTTTGATTCTTTGAACCAGAATTCCTTTCCTTTGCCATTTCCTCGAGCAAGCGAAAATGAGGCTATTGCAGTAAACTTCCCTTTATGGTGCTCATCGAATCAGCCAGCAATGCTTCCGTCTCTCCTTCGTTTCATCAAGCAACTCTCACCGAAAATTGTGGTCTCACTGGACCGAGGGTGCGATCGAAGTGACCTCCCATTTCCTCAACATATGCTTCAGGCCCTTCAGTCCTACATTAACCTCCTGGAATCTCTGGATGCTATCAATATGAATTCGGATGCCGTGAACAAGATTGAGAGGTTTCTTTTGCAACCCAGAATTGAAAGCACCGTCCTGGGACGGCTTCGAGCACCTGAAAGAATGCCCCTTTGGAAGACACTCTTTGCCTCTGCGGGGTTTACACCAGTAACCTTTAGCAACTTCACTGAAACTCAAGCAGAATGTGTAGCAAAGAGAACTTCTGTGAGGGGATTTCACGTCGAGAAACGCCAGGCTTCCCTAGTTTTGTGCTGGCAGCGCCGGGAGCTCATATCTGCTTCAGCTTGGAGGTGTTGA 2382 47.57 MVETLWNIVFVVVHFLFGDLGKGELEFSAAFSSSPICSGFAEKWVKKGEEQQEQEQEVEEEQEEGLSYFVLPNNEPTSVLHMRSPSPPTSASTLSSSFGGGGGGGGCVPSLPPETPAVEPVAGAGVGNAIFPGGLERYGVGLEDLESMWSETAGPEQSFLRWIAGDVVEDPSLGSKSVLQNGNIPFDLDGNAGIGIVDQGSEFETSAGNVLANINPNLSFPLAACAGFPDVNNVNNKSSSRSTCGGVVNYRSSSLGLNNRHGNFNVHNPIFTGSLENLVVPVSGMIYPQQLQPFESPDEKPQNLSTQVLLNQHQQPQNPSFFVPLTFGQQEQQLQPQLKRHNSSGGLDPNPNGQIPKVPFMDPGNEIFLRNHQLQVLQQQQQQQLGYPPGLQFLPQQKAMSPKPKVIGLGDEVAYHNPPQQQHQHQQHALLDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPVNPPPPRCPTPFDVIFKMGAYKVFSEISPLIQFVNFTCNQALLEALDDVDRIHIVDFDIGFGAQWASFMQELSLRNRGAPSLKITAFASPSTHHQTELGLMRENLTQFANDIGISFEFEVVNFDSLNQNSFPLPFPRASENEAIAVNFPLWCSSNQPAMLPSLLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAINMNSDAVNKIERFLLQPRIESTVLGRLRAPERMPLWKTLFASAGFTPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWRC 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19027646 19030122 - Lsi07G013050.1 Lsi07g01305 667727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01305 793 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 52 792 IPR005202 -
Lsi07g01305 793 MobiDBLite consensus disorder prediction 78 99 - -
Lsi07g01305 793 Coils Coil 41 61 - -
Lsi07g01305 793 PANTHER SCARECROW-LIKE PROTEIN 6 52 792 - -
Lsi07g01305 793 Pfam GRAS domain family 431 792 IPR005202 -
Lsi07g01305 793 ProSiteProfiles GRAS family profile. 421 792 IPR005202 -
Lsi07g01305 793 MobiDBLite consensus disorder prediction 78 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00218 Lsi-Chr7:2336418 Lsi07g01305 Lsi-Chr7:19027646 8.51E-69 dispersed
Lsi07g00219 Lsi-Chr7:2357801 Lsi07g01305 Lsi-Chr7:19027646 1.87E-67 dispersed
Lsi07g01305 Lsi-Chr7:19027646 Lsi09g01628 Lsi-Chr9:24535021 2.02E-155 dispersed
Lsi07g01305 Lsi-Chr7:19027646 Lsi10g00057 Lsi-Chr10:977937 5.30E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25685 PF03514 GRAS 8.00E-96 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01305 - - bhj:120090454 1333.55