Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01313 ATGATGGGTTCCAAATCTTCAGCCATGTTCTTCATCTTTTCAATTTTCATGGCCTTATCTTTGCCTCCAATTTATGCTTGTACTCCTTGCACCCAGCCCCACCCTCAGCCCCCTTATCACCGCCCTCCCCACGCTAAAATTCCCCATCCAAAACCCCACCCTCCACCCCACCATGGTGGCGGAGGAGGCGGCGGCGGAGGTGGAAGTAGTCGCGGAGGTGGTGGAGGAGGTGGTGGTGGGGGTGGTAGCCGTGGAGGCGGTGGGGGTGGAGGAGGCGGAGGTGGAGGTCATCCCCACCCACCAATTGTAATTCCACCACCAGTTATTTCTCCTCCAGTGATAACCCCTTCACCACCATCCACAACCTACCCTCCTTATACTAGTCCTCCTCCGAGCGGGGGTGGCGGTGGAGGTGGTAGCGCACCAGGGTCGGGGCAATACCCGCCGCCATCGACACCGGTTCAACCGACATGTCCAATAGATGCATTGAAATTAGGGTTATGTGTGGATGTTCTTGGAGGGTTGGTGCATATTGGATTAGGGAATCCAGTTGAAAATGCATGTTGTCCAGTGCTTGGAGGGCTGTTGGAACTTGAAGCAGCAATATGTTTATGCACAACTTTGAGGATTAAGCTTTTGAATCTCAATATATTCATTCCTTTGGCACTACAAGCTCTTATTACTTGTGGCAAGAATCCTCCTCCTGGCTTTGTTTGTCCTCCACTTTAA 729 52.4 MMGSKSSAMFFIFSIFMALSLPPIYACTPCTQPHPQPPYHRPPHAKIPHPKPHPPPHHGGGGGGGGGGSSRGGGGGGGGGGGSRGGGGGGGGGGGGHPHPPIVIPPPVISPPVITPSPPSTTYPPYTSPPPSGGGGGGGSAPGSGQYPPPSTPVQPTCPIDALKLGLCVDVLGGLVHIGLGNPVENACCPVLGGLLELEAAICLCTTLRIKLLNLNIFIPLALQALITCGKNPPPGFVCPPL 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19191393 19192121 + Lsi07G013130.1 Lsi07g01313 667735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01313 242 Gene3D - 156 241 IPR036312 -
Lsi07g01313 242 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 2 241 - -
Lsi07g01313 242 Pfam Hydrophobic seed protein 157 240 IPR027923 -
Lsi07g01313 242 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 160 241 IPR036312 -
Lsi07g01313 242 CDD HPS_like 156 239 IPR027923 -
Lsi07g01313 242 MobiDBLite consensus disorder prediction 34 155 - -
Lsi07g01313 242 MobiDBLite consensus disorder prediction 99 131 - -
Lsi07g01313 242 PANTHER - 2 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01313 - - - cmo:103490902 202.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01313 Lsi-Chr7:19191393 Lsi09g00414 Lsi-Chr9:4422721 2.58E-18 dispersed
Lsi07g01312 Lsi-Chr7:19168704 Lsi07g01313 Lsi-Chr7:19191393 1.22E-19 tandem
Lsi07g01313 Lsi-Chr7:19191393 Lsi07g01314 Lsi-Chr7:19209800 4.88E-17 tandem
Lsi04g01945 Lsi-Chr4:26566884 Lsi07g01313 Lsi-Chr7:19191393 1.29E-34 transposed
Lsi06g01002 Lsi-Chr6:20086819 Lsi07g01313 Lsi-Chr7:19191393 1.66E-38 transposed
Lsi07g01313 Lsi-Chr7:19191393 Lsi09g00410 Lsi-Chr9:4395604 3.91E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g517 . . Bda06g00034 . . Bpe07g00169 . . Cmo06g00794 . . . . . . . . . . . . . . . Cla10g00268 Cam10g0276 Cec10g0286 Cco10g0280 Clacu10g0278 Cmu10g1118 Cre10g0527 Cone2ag0209 Cone16ag0834 Cone4ag0656 Cone7ag0615 Lsi07g01313 . . Cme06g02586 . . . . . . . Bma12g00636 . . . Cma06g00772 . Car06g00689 . Cpe08g00747 . . . . . . . . . . . . . . . . Csa03g00287 Chy06g02036 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000904 5 2 1 6 4 2 3 2 2 2 3 2 4 2 2 4 2 5 3 2 3 2 3 3 3 3 3 5 2 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01313 Lsi_Chr07 FPKM 1.579569 1.348714 4.485028 4.109294 2.11365 1.59222 1.860767 7.767978 8.09905 7.580696