Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01314 ATGTATCTCTCTCATGCTACAAATCTCTCTCAAAATACTACAACACAATGGCTACCCGAACTTCTAATCACTACAATAATGACTATGAGGACTAGAATGAAAAAAGCCTCAATAAATGCTAGAAATGGCTCTCTATTGCTTCTTCTCCTCAAAATCGTCCATCAATCATCCTCAATCCTAGCAAATGTCCAAAAGAAAGTTTTAGCATTTAAAATTATTGTCCCATTTACCCAATCCCTACTTCTAAAACCCTATAAAAACCCTCCTAATCACCACATTTTTTCTCCATCCTCAACTCAAGAAGCCCTTCCAAAGTACACAAAGGGATATAACATCTCTAGGTTTTCAAACATGCTTTCTTCCAAAACCATCCCCTCAATTGCTTTGTTCTTTTGCCTCAACCTTCTCTTCTTTTCCCTTGTTACTGCTTGTGGCACATGTTCTCACCCTATAACAAGGCCAAAGCCAAGCCCAGGTTCCGGTGGTCGTCCCGGTTATGGTGGAAGCCCAGGTTTCGGTGGTAGTCCAGGCTCTGGTGGAAGCCCTGGTTCTGGTGGTAGTCCTGGCTCTGGTGGAAGCCCTGGTGCCGGTGGCAGTCCTGGTTCTGGTGGAAGCCCTGGTTCTGGTGGCAGTCCTGGCTCTGGGGGAAACCCTGGTTCCGGTGGTAGTCCGGGGACAGGTGGCAATAATCCAGGCACTGGTGGAGGTACTTGCCCTAGAGATGCTCTCAAGATAGGTGTATGTGCTAGAGTGCTTACCCTCGTAAATGCAACTATTGGCACACCACCCGTTACTCCATGTTGCAGTTTAATTCAAGGGCTAGCGGACCTTGAAGCTGCTGTTTGTCTTTGCACTGCAATTAGAGCAAGTATTCTAGGCCTCAACATAAACCTCCCAATTAATCTCAGCTTGCTGCTTAACGTTTGTAGCAGAAATACTCCTCGTGGATTCCAGTGTCCATAA 963 46.0 MYLSHATNLSQNTTTQWLPELLITTIMTMRTRMKKASINARNGSLLLLLLKIVHQSSSILANVQKKVLAFKIIVPFTQSLLLKPYKNPPNHHIFSPSSTQEALPKYTKGYNISRFSNMLSSKTIPSIALFFCLNLLFFSLVTACGTCSHPITRPKPSPGSGGRPGYGGSPGFGGSPGSGGSPGSGGSPGSGGSPGAGGSPGSGGSPGSGGSPGSGGNPGSGGSPGTGGNNPGTGGGTCPRDALKIGVCARVLTLVNATIGTPPVTPCCSLIQGLADLEAAVCLCTAIRASILGLNINLPINLSLLLNVCSRNTPRGFQCP 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19209800 19223090 - Lsi07G013140.1 Lsi07g01314 667736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01314 320 SMART aai_6 132 319 IPR016140 -
Lsi07g01314 320 MobiDBLite consensus disorder prediction 204 233 - -
Lsi07g01314 320 PANTHER - 123 319 - -
Lsi07g01314 320 Gene3D - 237 320 IPR036312 -
Lsi07g01314 320 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 240 320 IPR036312 -
Lsi07g01314 320 Pfam Hydrophobic seed protein 237 320 IPR027923 -
Lsi07g01314 320 MobiDBLite consensus disorder prediction 151 236 - -
Lsi07g01314 320 CDD HPS_like 238 319 IPR027923 -
Lsi07g01314 320 PANTHER HYPRP2 123 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01314 - - - cpep:111800635 169.859
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi07g01314 Lsi09g00414 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01314 Lsi-Chr7:19209800 Lsi09g00414 Lsi-Chr9:4422721 1.92E-39 dispersed
Lsi09g00415 Lsi-Chr9:4434519 Lsi07g01314 Lsi-Chr7:19209800 1.33E-23 dispersed
Lsi07g01313 Lsi-Chr7:19191393 Lsi07g01314 Lsi-Chr7:19209800 4.88E-17 tandem
Lsi07g01314 Lsi-Chr7:19209800 Lsi07g01315 Lsi-Chr7:19235298 1.10E-18 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g516 . . . Bda08g00572 Bpe05g00585 Bpe07g00168 Bma07g00990 . Cmo06g00792 . . Cma15g01136 . . Sed01g4005 . . Bhi11g00207 Tan01g2015 Cmetu06g0151 . Hepe06g1146 Mch10g1548 . . . . . . . . . . . . Lsi07g01314 Csa05g00410 Chy09g01101 . . . . Bda09g00096 . . Bma05g00768 Bma12g00635 . Cmo02g01588 Cmo15g01194 Cma06g00771 . . . . . Bhi12g00429 . . Lac11g2267 Hepe06g1140 . Lcy12g1814 Cla01g00384 Cam01g0400 Cec01g0393 Cco01g0414 . . Cre09g2126 Lsi09g00414 Csa03g00288 Chy06g02035 Cme09g01627
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000088 2 11 1 5 4 10 1 11 11 11 13 11 17 13 14 20 10 12 1 11 14 4 3 8 10 9 6 10 10 3 266
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01314 Lsi_Chr07 FPKM 2.224224 2.534555 16.611042 21.119055 4.873138 3.343217 4.29921 0.9683 1.332695 1.439723