Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01319 ATGCGGGTCAAGGAAATGCACCCTCTCTGCTGCATCACTCTGGAGAATTTCAGTGGCGGAATCGGCGACCAGTCACCAGAGGAGGCCACGTCGTTGTCCCGGAGTAGAAGTTTGCCGGTGAGCCTTCCGGCATTTTCGAATAATAATAACTCTCTGCAGATTTCTGGATCTATAACTAGGGTAGCTGGTGTTCTTTACAAATGGACTAATTACGGGAAGGGATGGAGATCGAGATGGTTCGTGTTAAGAGATGGTGTTTTATCTTACTCCAAAATTAGCCTTCTATCTCCCGATGATGATGTTCAATTAATCGGACAGATTTCGACGAATCGGCTTTCGAGAAGGAAGCGACAGAAAACTGGGGGAATAGTTCATTTGAAGGTATCACGGTTCCGAGAAAGCAAGTCAGATGACCGGCGGTTTTATATATTCACTGCCACAAAGACACTTCATCTGAGAACAGAATCAAAGAAAGACAGGGTGACCTGGATACAAGCTTTAGCCTCTTCCAAAAGCTTATTTCCATTGCAAATTGTGAATGATAATCTTCCCTTTGTACCAAATGATTTATCCCTTTCCACTCAGAAACTCAAGAAGCGTTTACTTGAAGAGGGAATCAGTGATGCAGTTGTTAAGGACTGCGAACAAATCATCCTCTCCGAGTTCTCAGAAATGCAGGGACAGGTGAAAGTACTTTTGGAAGAAAGATCGTGTTTGATTGATACTTTGAGGGAATTGGAGGCAGCTAATATAGAAATCGAAGCTGATGGAGTTCACAATGGTGAGTACCAGTTGATGAAACATGATTTTTCCACCGAATGCAGTGGAAAATATAGTGAGTCTTCAGATGACGTTGAAAAACAAGATCTTGAAGATGGGTCAGATGCTGATGAGAGTTTCTTCTATGACACAAAGGAAACATTTTCAGAACTCACTCTTAGCTGTGGGTCAGTAGAAGGGGCTTCTGATTCCTTAGATAAGGTTAAGGATCTTGAAAGTCGACAGGATGATGTAGAGAAGATGCACCACAAACAGAGAATTGAAAATTCTGTTCATTTTAATGTTCAGAGAAGAACAAAGCTTCCAGATCCCATGGAGAAAGAGAAACGGGTCAGTCTTTGGTCTATGATAAAGGACAATGTTGGAAAGGATCTTACACGAGTTTGTCTCCCAGTTTATTTCAATGAGCCGATATCATCCCTTCAGAAATGTTGTGAGGACATGGAATATTCTCATCTCTTAGACCAAGCATATGAATATGGAAGACAGGGAAACAATTTCCTCAGGATCCTCAAGGTTGCTGCATTTGCTGTTTCTGGTTATGCTTCCTCTGAAGGACGACATTGTAAACCATTCAACCCTTTGCTTGGGGAAACTTATGAAGCTGACTTTCCTGAGAAAGGGATTCGCTTCTTCTCCGAGAAGGTAAGTCATCACCCGACAGTCATTGCATGCCATTGTGAAGGCAGAGGATGGAGATTCTGGGGTGACAGCAACCTCCGATCAAAATTTTGGGGTCGTTCAATTCAGCTTGACCCTGTTGGAGTTCTTAACCTGGAATTTGATGATGGAGAAATATTTCAGTGGAGCAAGGTCACAACAAATATTTATAATCTTATTCTCGGAAAAGTATATTGTGATCACCATGGTACAATGCACATACGTGGTAATAGAGAATATTCTTGCACACTCAAGTTCAAAGAGCCTTCAATTTTAGATCGAAATCCTCATCAGGTTCATGGATTTATTGAAGATGCTAATGGTCGAAAGGTTGCCACAATATTTGGAAAGTGGGATGAAGGTATGTATTACGTGGAAGGTGAGTGCAATGGGAACCCGAAGCGCAATAGCCCTCCAAGTGATGAATTGATGCTGTGGAAAAGTGAAAAACCTGCTCCTGATCTCACTCGTTACAATTTAACTTCATTTGCCATCACTCTTAATGAACTGACACTGGACCTGAAGGAAAGGCTTCCACCCACGGATTCAAGACTTAGACCAGATCAGCGACATTTGGAAAATGGCGAATATGAAAAGGCAAATGAAGAGAAACAACGTTTGGAGAGACGACAGCGAATCTCCAGGAAGTTGCAAGACAATGGTTGGAAACCCAGATGGTTTTATAGAGAAGGTGAAGATGGGCCATACCGATACATGGGTGGCTACTGGGAAGCACGAGGGGAAGGAAAGTGGGATGGTTGCCCAGACGTATTTGGCGAATTGAACGAGAGCATGGTCGGCAAATCGGGATCATGA 2256 42.77 MRVKEMHPLCCITLENFSGGIGDQSPEEATSLSRSRSLPVSLPAFSNNNNSLQISGSITRVAGVLYKWTNYGKGWRSRWFVLRDGVLSYSKISLLSPDDDVQLIGQISTNRLSRRKRQKTGGIVHLKVSRFRESKSDDRRFYIFTATKTLHLRTESKKDRVTWIQALASSKSLFPLQIVNDNLPFVPNDLSLSTQKLKKRLLEEGISDAVVKDCEQIILSEFSEMQGQVKVLLEERSCLIDTLRELEAANIEIEADGVHNGEYQLMKHDFSTECSGKYSESSDDVEKQDLEDGSDADESFFYDTKETFSELTLSCGSVEGASDSLDKVKDLESRQDDVEKMHHKQRIENSVHFNVQRRTKLPDPMEKEKRVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCCEDMEYSHLLDQAYEYGRQGNNFLRILKVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPEKGIRFFSEKVSHHPTVIACHCEGRGWRFWGDSNLRSKFWGRSIQLDPVGVLNLEFDDGEIFQWSKVTTNIYNLILGKVYCDHHGTMHIRGNREYSCTLKFKEPSILDRNPHQVHGFIEDANGRKVATIFGKWDEGMYYVEGECNGNPKRNSPPSDELMLWKSEKPAPDLTRYNLTSFAITLNELTLDLKERLPPTDSRLRPDQRHLENGEYEKANEEKQRLERRQRISRKLQDNGWKPRWFYREGEDGPYRYMGGYWEARGEGKWDGCPDVFGELNESMVGKSGS 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19321813 19332193 - Lsi07G013190.1 Lsi07g01319 667741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01319 751 MobiDBLite consensus disorder prediction 276 296 - -
Lsi07g01319 751 Gene3D - 57 173 IPR011993 -
Lsi07g01319 751 Gene3D - 458 623 - -
Lsi07g01319 751 ProSiteProfiles PH domain profile. 58 172 IPR001849 -
Lsi07g01319 751 SUPERFAMILY PH domain-like 61 169 - -
Lsi07g01319 751 Pfam Oxysterol-binding protein 372 726 IPR000648 GO:0008289
Lsi07g01319 751 MobiDBLite consensus disorder prediction 658 687 - -
Lsi07g01319 751 SMART PH_update 59 174 IPR001849 -
Lsi07g01319 751 SUPERFAMILY Oxysterol-binding protein-like 367 744 IPR037239 -
Lsi07g01319 751 Gene3D - 669 724 - -
Lsi07g01319 751 Pfam Pleckstrin homology domain 63 168 - -
Lsi07g01319 751 Coils Coil 229 249 - -
Lsi07g01319 751 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 348 743 IPR000648 GO:0008289
Lsi07g01319 751 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 335 IPR000648 GO:0008289
Lsi07g01319 751 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 348 743 - -
Lsi07g01319 751 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 335 - -
Lsi07g01319 751 Coils Coil 670 700 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01319 K20456 OSBP; oxysterol-binding protein 1 - csv:101213703 1472.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01348 Lsi-Chr2:18063344 Lsi07g01319 Lsi-Chr7:19321813 3.33E-48 transposed
Lsi04g00633 Lsi-Chr4:5805054 Lsi07g01319 Lsi-Chr7:19321813 0 transposed
Lsi09g01051 Lsi-Chr9:15870577 Lsi07g01319 Lsi-Chr7:19321813 1.01E-176 transposed
Lsi07g01319 Lsi-Chr7:19321813 Lsi09g00408 Lsi-Chr9:4341826 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g511 Blo02g01049 Blo03g00169 Bda06g00037 . Bpe05g00588 Bpe07g00165 . . Cmo06g00789 Cmo16g01114 . Cma15g01141 Car02g01307 Car15g01037 . Cpe14g00881 Cpe05g00242 Bhi11g00212 . . . . . . Cla10g00276 Cam10g0285 Cec10g0293 Cco10g0290 Clacu10g0286 Cmu10g1126 Cre10g0534 . . Cone6ag0690 Cone9ag0692 Lsi07g01319 . . Cme06g02601 . Blo19g00281 Bda07g00005 . . . Bma05g00770 . . . Cmo15g01200 Cma06g00769 Cma16g01066 Car06g00687 Car16g01012 Cpe08g00749 . Bhi12g00421 . . Lac11g2262 Hepe06g1148 . Lcy12g1808 . . . . . . . . Csa03g04675 . Cme09g01638
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01319 Lsi_Chr07 FPKM 78.498283 83.875092 117.22551 117.531609 53.786564 57.237396 56.964981 158.740234 156.682022 151.399048