Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01320 ATGTCGGGCATTGAAGACGAAGATCCTCGCATCCATGGCATCCGAACCAAAATCCGAGTCGTTCCTGATTTTCCGAAACCAGGTATCATGTTCCAGGATATTACCACTCTGTTGCTTGAACCGAAGGCGTTCAAGGATGTGATTGATTTGTTCGTCGAGCGATACAAGGGGAAAAACATCACCGTCGTTGCAGGAATTGAGGCGCGAGGGTTTATTTTTGGTCCTCCAATTGCGTTGGCTATTGGAGCCAAGTTTGTGCCCTTGAGAAAACCAAAGAAATTGCCTGAGTACGTGTTGGAATATGGAAGAGCTTGCTTGGAAATGCATGTTGGGGCTGTTGAGGCCGGCGAACGTGCTTTGGTTGTTGATGACTTGATTGCCACTGGTGGGACTCTCTGTGCAGCCATCAATTTACTTGAACGAGCTGGAGCCGAAGTGGTTGAATGTGCTTGCGTAATTGAATTACCGGATTTAAAGGGGCACCCGACCTTACAACAGGGGGCTGCCAACTTACCCCTAGGATATTTTGTGGCCACCATGGATTGA 546 48.35 MSGIEDEDPRIHGIRTKIRVVPDFPKPGIMFQDITTLLLEPKAFKDVIDLFVERYKGKNITVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPEYVLEYGRACLEMHVGAVEAGERALVVDDLIATGGTLCAAINLLERAGAEVVECACVIELPDLKGHPTLQQGAANLPLGYFVATMD 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19397679 19407466 + Lsi07G013200.1 Lsi07g01320 667742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01320 181 SUPERFAMILY PRTase-like 13 166 IPR029057 -
Lsi07g01320 181 CDD PRTases_typeI 47 160 IPR000836 -
Lsi07g01320 181 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 3-RELATED 6 166 - -
Lsi07g01320 181 Pfam Phosphoribosyl transferase domain 39 158 IPR000836 -
Lsi07g01320 181 Hamap Adenine phosphoribosyltransferase [apt]. 14 179 IPR005764 GO:0003999|GO:0005737|GO:0006168
Lsi07g01320 181 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 6 166 - -
Lsi07g01320 181 Gene3D - 2 174 IPR029057 -
Lsi07g01320 181 TIGRFAM apt: adenine phosphoribosyltransferase 15 166 IPR005764 GO:0003999|GO:0005737|GO:0006168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01320 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - vvi:100264315 290.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01320 Lsi-Chr7:19397679 Lsi08g01213 Lsi-Chr8:20647915 5.04E-78 dispersed
Lsi08g01520 Lsi-Chr8:23263235 Lsi07g01320 Lsi-Chr7:19397679 8.34E-82 transposed
Lsi07g01320 Lsi-Chr7:19397679 Lsi09g00406 Lsi-Chr9:4288937 1.44E-86 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01213 . 33 168 PRT Gene Family AT1G80050 80.9 7.8e-57 216.9
Lsi08g01520 . 107 257 PRT Gene Family AT1G80050 68.9 1.1e-53 206.5
Lsi07g01320 . 30 165 PRT Gene Family AT1G80050 73.2 2.4e-53 205.3
Lsi09g00406 . 30 154 PRT Gene Family AT1G80050 70.6 6.0e-49 190.7
Lsi08g01213 . 1 148 PRT Gene Family AT5G11160 81.1 4.1e-64 241.1
Lsi08g01520 . 85 223 PRT Gene Family AT5G11160 73.4 2.0e-55 212.2
Lsi09g00406 . 8 134 PRT Gene Family AT5G11160 74.0 2.0e-50 195.7
Lsi07g01320 . 8 139 PRT Gene Family AT5G11160 68.1 2.6e-47 185.3
Lsi08g01520 . 78 260 PRT Gene Family AT1G27450 80.9 2.9e-79 291.6
Lsi08g01213 . 11 179 PRT Gene Family AT1G27450 70.6 8.9e-65 243.4
Lsi07g01320 . 7 166 PRT Gene Family AT1G27450 72.9 7.6e-64 240.4
Lsi09g00406 . 7 157 PRT Gene Family AT1G27450 70.4 4.6e-61 231.1
Lsi10g00425 . 71 555 PRT Gene Family AT2G16570 85.2 1.6e-242 835.5
Lsi10g00425 . 71 555 PRT Gene Family AT4G34740 86.2 1.5e-243 839.0
Lsi10g00425 . 28 528 PRT Gene Family AT4G38880 70.9 9.5e-200 693.3
Lsi08g01520 . 78 260 PRT Gene Family AT1G27450 80.9 2.9e-79 291.6
Lsi08g01213 . 11 179 PRT Gene Family AT1G27450 70.6 8.9e-65 243.4
Lsi07g01320 . 7 166 PRT Gene Family AT1G27450 72.9 7.6e-64 240.4
Lsi09g00406 . 7 157 PRT Gene Family AT1G27450 70.4 4.6e-61 231.1
Lsi08g01213 . 33 168 PRT Gene Family AT1G80050 80.9 7.8e-57 216.9
Lsi08g01520 . 107 257 PRT Gene Family AT1G80050 68.9 1.1e-53 206.5
Lsi07g01320 . 30 165 PRT Gene Family AT1G80050 73.2 2.4e-53 205.3
Lsi09g00406 . 30 154 PRT Gene Family AT1G80050 70.6 6.0e-49 190.7
Lsi09g00406 . 6 104 PRT Gene Family AT4G22570 82.8 5.0e-44 173.7
Lsi07g01320 . 1 95 PRT Gene Family AT4G22570 87.5 1.1e-43 172.6
Lsi08g01520 . 83 174 PRT Gene Family AT4G22570 82.6 4.4e-40 160.6
Lsi08g01213 . 11 100 PRT Gene Family AT4G22570 78.9 2.0e-37 151.8
Lsi09g00406 . 1 96 PRT Gene Family AT4G12440 84.4 8.1e-41 162.9
Lsi07g01320 . 1 95 PRT Gene Family AT4G12440 85.3 2.4e-40 161.4
Lsi08g01520 . 78 173 PRT Gene Family AT4G12440 79.2 3.8e-38 154.1
Lsi08g01213 . 4 99 PRT Gene Family AT4G12440 78.1 3.2e-37 151.0
Lsi08g01213 . 1 148 PRT Gene Family AT5G11160 81.1 4.1e-64 241.1
Lsi08g01520 . 85 223 PRT Gene Family AT5G11160 73.4 2.0e-55 212.2
Lsi09g00406 . 8 134 PRT Gene Family AT5G11160 74.0 2.0e-50 195.7
Lsi07g01320 . 8 139 PRT Gene Family AT5G11160 68.1 2.6e-47 185.3
Lsi08g00585 . 1 190 PRT Gene Family AT1G71750 64.2 1.9e-68 255.8
Lsi02g01799 . 15 467 PRT Gene Family AT1G55810 85.2 1.2e-224 775.8
Lsi05g00389 . 10 414 PRT Gene Family AT1G55810 67.6 1.3e-162 569.7
Lsi02g01799 . 64 479 PRT Gene Family AT3G27440 75.5 1.2e-184 642.9
Lsi05g00389 . 30 414 PRT Gene Family AT3G27440 64.5 9.5e-147 516.9
Lsi02g01799 . 11 466 PRT Gene Family AT3G27190 74.9 3.6e-206 714.5
Lsi05g00389 . 4 414 PRT Gene Family AT3G27190 75.7 4.3e-191 664.5
Lsi01g01465 . 4 350 PRT Gene Family AT3G53900 52.1 2.3e-86 315.8
Lsi02g01799 . 1 467 PRT Gene Family AT4G26510 83.9 1.7e-229 792.0
Lsi05g00389 . 3 414 PRT Gene Family AT4G26510 68.6 8.1e-171 597.0
Lsi02g01799 . 11 469 PRT Gene Family AT5G40870 73.8 6.8e-205 710.3
Lsi05g00389 . 4 414 PRT Gene Family AT5G40870 77.1 4.6e-193 671.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01320 Lsi_Chr07 FPKM 172.626266 187.598297 171.072128 163.214035 184.949295 211.818558 174.71611 185.00354 189.830582 187.28978