Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01322 ATGCCAGTAGCCAACCACACTCAACGATTGAACCATCCACTTCTTTTTTCATTCGGAAATTTTCTCTCTGCAAACAACAAAGCTCTGATGTTAGCTCCTCCGAATTTCCTCCCCTCACCCCAGCTATCCACCATGCAACACTCCCCCAATTCCCAATCCCAACCCCCAACTTCCCGCCGCGTCGCAGTGATCGGCGCCGGCGCCGGCGGCCTCGTCACTGCCCGTGAGCTCCGTCGCGAGGGCCACTGTGTGGTCGTTTTCGAACGGAATAATCAAATCGGAGGGACCTGGGTATATTCGCCGGAAATTGAATCCGACCCACTTGGAGTTGACCCGAATCGGACCCGAATCCATAGCAGCCTCTACAAATCTCTACGAACCAATCTCCCCAGAGAACTCATGGGGGTCCGCGATTATCCGTTTGTGCCTCGAGAAGGAGAGGATCGGGATCCGAGGCGATTTCCAAGTCATCGAGAGGTTTTAAAGTATTTGGAAGATTTCGCGAATGCATTTGGGATTTGTAAATTGGTGAGGTTTGGAACTGAGGTGGTGTTTGCTGGTTTGGGGGAGCTTGGGAAATGGAGGGTTGAATTTAGAGGTGAAAATGGGGATGTTGATGACGACATTTTCGATGCTGTGGTTGTTTGTGTTGGAAATTATTCGCAGCCTCGAGTAGCAGAGATTCCTGGGCTTGATGGATGGCCTGGGGAGCAAATACATAGTCACAATTATCGTGATCCCGAACCATTTCGGGGTAAGGTTGTTATCTTGATAGGTTATTCTTCAAGTGGTACGGACATTTCTCAGGAGCTCATTGGGGTTGCCAAAGAAATTCATATTGCTTGCCGATCAGCTAAAACAGAGATTTTGGACACAGAATCAATTATTAGTAATGTGTCATTTCATCCAACGATCGAAAGTGTCCGTAAAGATGGGACAGTGGTCTTTCAAGACGGGTGCATCGTTTTGGCTGATGTTATTCTGCATTGCACTGGGATTGCACTTCCATCGAAAGAGGAAATGCTTGCTGATGTCAAAGCTTTTTATGCAGATCTCAAAGCTTTTGGCAAGCCCAAGCATCGGACTCATGAATTGGGTGATTATATGCCTGCCTACTTAGATTGGCTTGCAGCAACATGTGGTTGTCCTGCCTATGAAGAATGGAGAAAGGAAATGTACATTGCTACTCATATTTATAAAATGGCCAATCTCGAGACATACCGTGATGATTGGTACGACAATGAGTTGATTCGTCAAGCTTATGAGGAATTTAGCAAGTATACTACAAGTGAAAGAAGTGAAAACCACACTCAAACTTGA 1320 46.59 MPVANHTQRLNHPLLFSFGNFLSANNKALMLAPPNFLPSPQLSTMQHSPNSQSQPPTSRRVAVIGAGAGGLVTARELRREGHCVVVFERNNQIGGTWVYSPEIESDPLGVDPNRTRIHSSLYKSLRTNLPRELMGVRDYPFVPREGEDRDPRRFPSHREVLKYLEDFANAFGICKLVRFGTEVVFAGLGELGKWRVEFRGENGDVDDDIFDAVVVCVGNYSQPRVAEIPGLDGWPGEQIHSHNYRDPEPFRGKVVILIGYSSSGTDISQELIGVAKEIHIACRSAKTEILDTESIISNVSFHPTIESVRKDGTVVFQDGCIVLADVILHCTGIALPSKEEMLADVKAFYADLKAFGKPKHRTHELGDYMPAYLDWLAATCGCPAYEEWRKEMYIATHIYKMANLETYRDDWYDNELIRQAYEEFSKYTTSERSENHTQT 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19419291 19423185 + Lsi07G013220.1 Lsi07g01322 667744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01322 439 Pfam Flavin-binding monooxygenase-like 59 285 IPR020946 GO:0004499|GO:0050660|GO:0050661
Lsi07g01322 439 PRINTS Flavin-containing monooxygenase (FMO) signature 266 281 IPR000960 GO:0050660|GO:0050661
Lsi07g01322 439 PRINTS Flavin-containing monooxygenase (FMO) signature 59 75 IPR000960 GO:0050660|GO:0050661
Lsi07g01322 439 PRINTS Flavin-containing monooxygenase (FMO) signature 239 253 IPR000960 GO:0050660|GO:0050661
Lsi07g01322 439 PRINTS Flavin-containing monooxygenase (FMO) signature 83 107 IPR000960 GO:0050660|GO:0050661
Lsi07g01322 439 PANTHER DIMETHYLANILINE MONOOXYGENASE 333 428 - -
Lsi07g01322 439 PANTHER DIMETHYLANILINE MONOOXYGENASE 54 332 - -
Lsi07g01322 439 Gene3D - 57 243 IPR036188 -
Lsi07g01322 439 Gene3D - 316 436 IPR036188 -
Lsi07g01322 439 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 333 428 - -
Lsi07g01322 439 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 54 332 - -
Lsi07g01322 439 MobiDBLite consensus disorder prediction 40 59 - -
Lsi07g01322 439 SUPERFAMILY FAD/NAD(P)-binding domain 55 411 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01322 - - - csv:116401639 502.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01322 Lsi-Chr7:19419291 Lsi10g00843 Lsi-Chr10:12112062 1.90E-16 dispersed
Lsi07g01322 Lsi-Chr7:19419291 Lsi07g01326 Lsi-Chr7:19438941 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g506 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00282 Cam10g0292 Cec10g0300 Cco10g0296 Clacu10g0292 Cmu10g1131 Cre10g0539 . . . . Lsi07g01322 . . Cme06g02606 . . . . . . . . . . . . . . . Cpe08g00751 . . . . . . . . . . . . . . . . Csa03g00301 Chy06g02023 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01322 Lsi_Chr07 FPKM 89.988617 94.707603 55.666645 53.001976 54.553375 53.052288 56.831352 45.218235 47.243721 49.134918