Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01326 ATGAGGATGATGATGATGATGATAATAAAAAATGGAGTGGGCAGCAAGACCAAATCTTTTATCATACTTGAGCAAAAAGATTCCCTTTTTCAATCGGAAGATTTTCTTGAAGAACAAATCCATGTTATAGCCAATTACGTACTCAATTTCCTCCCCTCACCTCAACCAACGACGATGCAACACTCCCGGCGCGTGGCAGTGATCGGCGCCGGCGCCGCTGGCCTCGTCTCGGCCCGGGAACTTTCCCGCGAGGGCCACCATGTGGTCGTATTCGAACGAAATACTCAAATCGGAGGGACCTGGGTATATTCGCCGGAAATTGAATCCGACCCACTTGGAGTCGACCCGAATCGGACCCGAATCCATAGCAGCCTCTTCAATTCTCTACGCACCAATATCCCCAGAGAACTCATGGGGATCCGCGATTACCCGTTTGTGCCTCGAGAAGGGGAGAATCGAGATCAGAGGCGATTTCCAAGTCATCGAGAGGTTCTAAAGTATTTGGAAGATTTCGCGAATGAATTTGGGATTTGTAAATTGGTGAGGTTTGGAACTGAGGTGGTCTTTGCTGGTTTGGAGGAGCTTGGGAAATGGAGGGTTGAATTTAGATGTGAAAATGGGGCTGTTGATTATGACATTTTTGATGCTGTGGTTGTTTCTGTTGGGAACTTTTCCCAGCCTCGAGTGGCAGAGATTCCTGGGATTGATGGATGGCCTGGGGAGCAAGTGCATAGTCACAATTATCGGGATCCCGAACCATTTCGGGGTAAGGTTGTTGTCTTGATAGGTTATTCTTCAAGCGGTACAGACATTTCTCAGGAGCTCATTGGGGTTGCCAAAGAAATTCATATTGCTTGGAGATCAGCTAAAACAGAGCTTTTGGACACAGAATCAAATATTAGTAATGTGTCATTTCATCCAATGATCGAAAGTGTCCGTAAAGATGGGACAGTGGTCTTTCATGATGGGTGCGTCGTTCGGGCTGATGTTATTCTGCATTGCACTGGGTACAAATATCGTTTCCCTTTTCTTGAAACCAATGGCATTGTTACGGTGGACGACAACCGTGCTGTTCCTTTTCCCATGTTTCAGCTTCAAAGCAATTGGGTTGCTGGTGTTTTATCAAACAGGATTGCACTTCCATCGAAAGAGGAAATGCTGGCTGATGTTAAAGCTTTTTATGAAGATCTCGAAGCTTTTGGCAAGCCCAAGCATCGGACCCATGAATTGGGTGATTATACGGGTCAAGCAGTAATTGTGTCCCATCCTGCCTACTGTAACTGGCTTGCAGCAACTTGTGGTTGTCCTTCCTATGCAGAATGGAGAAAGGAAATGTTCAATGCTACTGATATTAATAAAATGGCCAATCTCGGGTCATACCGTGATGACTGGCACGACGATGAGTTGATTCGTCAAGCTTATGAGGAATTTAGCAAGTATACTATAAATGAAAGAAGTCAAAACCACTCAAATTTGAATGTTTCATAA 1488 45.09 MRMMMMMIIKNGVGSKTKSFIILEQKDSLFQSEDFLEEQIHVIANYVLNFLPSPQPTTMQHSRRVAVIGAGAAGLVSARELSREGHHVVVFERNTQIGGTWVYSPEIESDPLGVDPNRTRIHSSLFNSLRTNIPRELMGIRDYPFVPREGENRDQRRFPSHREVLKYLEDFANEFGICKLVRFGTEVVFAGLEELGKWRVEFRCENGAVDYDIFDAVVVSVGNFSQPRVAEIPGIDGWPGEQVHSHNYRDPEPFRGKVVVLIGYSSSGTDISQELIGVAKEIHIAWRSAKTELLDTESNISNVSFHPMIESVRKDGTVVFHDGCVVRADVILHCTGYKYRFPFLETNGIVTVDDNRAVPFPMFQLQSNWVAGVLSNRIALPSKEEMLADVKAFYEDLEAFGKPKHRTHELGDYTGQAVIVSHPAYCNWLAATCGCPSYAEWRKEMFNATDINKMANLGSYRDDWHDDELIRQAYEEFSKYTINERSQNHSNLNVS 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19438941 19443917 + Lsi07G013260.1 Lsi07g01326 667748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01326 495 Gene3D - 290 485 IPR036188 -
Lsi07g01326 495 PANTHER DIMETHYLANILINE MONOOXYGENASE 58 359 - -
Lsi07g01326 495 Pfam Flavin-binding monooxygenase-like 63 288 IPR020946 GO:0004499|GO:0050660|GO:0050661
Lsi07g01326 495 PRINTS Flavin-containing monooxygenase (FMO) signature 243 257 IPR000960 GO:0050660|GO:0050661
Lsi07g01326 495 PRINTS Flavin-containing monooxygenase (FMO) signature 321 348 IPR000960 GO:0050660|GO:0050661
Lsi07g01326 495 PRINTS Flavin-containing monooxygenase (FMO) signature 270 285 IPR000960 GO:0050660|GO:0050661
Lsi07g01326 495 PRINTS Flavin-containing monooxygenase (FMO) signature 87 111 IPR000960 GO:0050660|GO:0050661
Lsi07g01326 495 PRINTS Flavin-containing monooxygenase (FMO) signature 63 79 IPR000960 GO:0050660|GO:0050661
Lsi07g01326 495 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 58 359 - -
Lsi07g01326 495 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 357 481 - -
Lsi07g01326 495 PANTHER DIMETHYLANILINE MONOOXYGENASE 357 481 - -
Lsi07g01326 495 Gene3D - 61 246 IPR036188 -
Lsi07g01326 495 SUPERFAMILY FAD/NAD(P)-binding domain 61 288 IPR036188 -
Lsi07g01326 495 SUPERFAMILY FAD/NAD(P)-binding domain 305 468 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01326 - - - csv:116401639 742.651
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00096 Lsi-Chr2:801593 Lsi07g01326 Lsi-Chr7:19438941 1.20E-90 dispersed
Lsi05g00091 Lsi-Chr5:1619168 Lsi07g01326 Lsi-Chr7:19438941 1.16E-08 dispersed
Lsi07g01326 Lsi-Chr7:19438941 Lsi10g00843 Lsi-Chr10:12112062 8.07E-16 dispersed
Lsi07g01322 Lsi-Chr7:19419291 Lsi07g01326 Lsi-Chr7:19438941 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g504 . . . . . . . . Cmo06g00787 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01326 . . Cme06g02610 . . . . . . . . . . . Cma06g00767 . . Car16g01008 . . . . . . . . . . . . . . . . . . Chy06g02021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01326 Lsi_Chr07 FPKM 64.016991 74.52887 26.053959 25.08156 26.47802 22.474037 26.086084 11.263928 11.239594 12.184467