Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01328 ATGTGTAATTATAAATATGTCAAACCAAGCATAGCTCAATTGAGGTATGGTTTGAATCTTCCTACCCCGATGACGTCGGCGCATTGGGTGGAGCGACGAATCAAATTCACCACCGACAATGGCGAATCGTCTTCAACCCGACGCTCTCAACAGAATTTCAAGATTTCGCGTCCTGAAATTCTTCCAAAACACTGTAATGATCGTTGGATTCATATCAGAAACCTCCCATCTCGATTCAATCTCGATCTCCTTTCCAATTGTTCTGAATACCCTATTTTCGATGATTTTTGCCCTTATTTGGCCAACCACGGTCTTGGCCAAAAGACTTACAATCGATCTCATAGCTGGTATAGGACCGATCCTTCCATGCTTGAACTCATTTTCCATCGCCGAATGCTTGAATATCCTTGTCTAACCTCCGATCCCGATTTTGCTAATGCGATTTATCTTCCTTATTACACTTCCATTGATGCCCTGAAATACCTCTACGGTCCAGAAGTGAATTCCAGTGCCGAGCATGGCCTCGAGCTTTTTGATTTCCTCCGCCGGAACCAGCCGGAAATTTGGGACCGCCGTCTCGGCCATGACCATTTCTTCGTCATGGCGAGGCCGGCCTGGGATTTCTCTCAGCCATTGGTGAATGATCCCCCGATTTGGGGCACTTCGTTATTGGAATTGCCGCAGTTTTTCAATGTCACTGCATTGACATACGAGGGCAGAGCTTGGCCATGGCAGGAGCAAGCAATTCCTTATCCCACTTCATTCCACCCGCCTAATCTTGCATTCTTGGAGTCTTGGTTGCAGAGAGTCAAGCGATCTAAACGTTCCACTTTGATGCTGTTCGCTGGTGGGGGCGGCGTCTCGGCCACTCCCAATATCCGTCGGAGCATCCGGGATGAATGCAAGAGCACGGTTGATGACGATGACGCAACCAACACTGGCAATCGCCGTAATGGGGATGCCAGTCTATATTCAAACTTGTGTGCAGTTGTGGATTGCTCTAATGGAATATGTGAGCATGACCCTGTTAGGTACTTCAGACCAATGTTGCAGGCGACTTTCTGCTTGCAGCCACCTGGCGACACCCCAACACGGAGGTCGACTTTTGATGGGATCCTTGCCGGGTGCATACCGGTGTTCTTCGAGGACCTCTCTGCGAAATCTCAGTACAAATGGCACTTGCCGGAGGAGGAGTTTGAGGAATTCACAGTGACAATACCTAAAGAAGACGTGGTGTTCAAGGGGGTGAAGATTTTGGATGTGTTGATGGGAATTCCTAGAGCGAGGATCAGAAGGATGAGAGAAAAAGTGATACAGTTGATTCCTAGCGTGATGTACAGAAAGCATGGAAGTTCATTAGGCTTAAGAACAAAGAAAGATGCAATTGATATAGCCATTGAAGGAACACTGCAGAAGATTGGTATGAGAGTAAAAGAATTGGATTTAGATTAA 1452 47.04 MCNYKYVKPSIAQLRYGLNLPTPMTSAHWVERRIKFTTDNGESSSTRRSQQNFKISRPEILPKHCNDRWIHIRNLPSRFNLDLLSNCSEYPIFDDFCPYLANHGLGQKTYNRSHSWYRTDPSMLELIFHRRMLEYPCLTSDPDFANAIYLPYYTSIDALKYLYGPEVNSSAEHGLELFDFLRRNQPEIWDRRLGHDHFFVMARPAWDFSQPLVNDPPIWGTSLLELPQFFNVTALTYEGRAWPWQEQAIPYPTSFHPPNLAFLESWLQRVKRSKRSTLMLFAGGGGVSATPNIRRSIRDECKSTVDDDDATNTGNRRNGDASLYSNLCAVVDCSNGICEHDPVRYFRPMLQATFCLQPPGDTPTRRSTFDGILAGCIPVFFEDLSAKSQYKWHLPEEEFEEFTVTIPKEDVVFKGVKILDVLMGIPRARIRRMREKVIQLIPSVMYRKHGSSLGLRTKKDAIDIAIEGTLQKIGMRVKELDLD 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19445238 19448277 - Lsi07G013280.1 Lsi07g01328 667750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01328 483 PANTHER XYLOGLUCAN GALACTOSYLTRANSFERASE GT19-RELATED 64 473 - -
Lsi07g01328 483 Pfam Exostosin family 65 421 IPR040911 -
Lsi07g01328 483 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 64 473 IPR004263 GO:0006486|GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01328 - - - csv:101219204 840.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01328 Lsi-Chr7:19445238 Lsi09g01610 Lsi-Chr9:24291605 5.47E-86 dispersed
Lsi07g01328 Lsi-Chr7:19445238 Lsi02g00073 Lsi-Chr2:642125 3.99E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g501 . Blo03g00172 Bda06g00038 . . Bpe07g00161 . . Cmo06g00786 . . . . . . . . . . . . . . . Cla10g00283 Cam10g0294 Cec10g0301 Cco10g0297 Clacu10g0293 Cmu10g1132 Cre10g0540 . . . . Lsi07g01328 . . Cme06g02611 . . . . . . Bma05g00774 Bma12g00152 . . . Cma06g00766 . Car06g00684 . Cpe08g00752 . . . . . . . . . . . . . . . . Csa03g00302 Chy06g02020 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009812 1 0 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01328 Lsi_Chr07 FPKM 3.708471 4.481568 4.872039 5.540258 23.141558 26.328104 26.756147 8.884236 7.358062 7.521492