Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01331 ATGTCATCTTCTTCCCTTCCTACAACTTTCTCTCAACTTCCTCCTCCTCCTCCTTCTTCCGACCAACTTTGCTATGTCCATTGTAACATTTGCGACACCATTTTGGCGGTGAGTGTTCCTTCTACTAGTTTGTTCAAAATGGTGACTGTTCGTTGTGGGTATTGTGCTAATCTTTTGCCGGTGAATATGTGTGAACTCAAAATTTTAAAGTTTTGGTTTTGTTGTTTTCAGGAAGAGATCTCAAATAATCCAAATCAAAATCTTGTGATGAACCAAACCGAAGGAATTGATTTAACCATGGCCACTCGTGTTGCTAATGATCTTCCAAGGCACCCTCCAACCATAAATAGACGAAAAAGGAAGCATAGATCTGGAATGAGGGAAGAGATCTCAAATAATCCAAATCAAAATCTTGTGATGAACCAAACCGAAGGAATTGATTTAACCATGGCCACTCGTGTTGCTAATGATCTTCCAAGGCACCCTCCAACCATAAATAGACAAAAGAAAAAAAGAAAGCCCTTGGATAAAGCTACTTTGGCTCAGGGGTATTCTCATTGGATAATAAGATGTATTGTAAACAAAATTGTAACTGTCAGTGTATATGATAGTAATTTTCTGCTAGCCTTGGCCTTGAGATATGATGAGGGTGCTAAAGATGTGTCAACCTAG 672 38.99 MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKILKFWFCCFQEEISNNPNQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRKRKHRSGMREEISNNPNQNLVMNQTEGIDLTMATRVANDLPRHPPTINRQKKKRKPLDKATLAQGYSHWIIRCIVNKIVTVSVYDSNFLLALALRYDEGAKDVST 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19473302 19480706 - Lsi07G013310.1 Lsi07g01331 667753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01331 223 Pfam YABBY protein 19 171 IPR006780 GO:0007275
Lsi07g01331 223 PANTHER PROTEIN YABBY 4-LIKE 2 173 - -
Lsi07g01331 223 MobiDBLite consensus disorder prediction 157 177 - -
Lsi07g01331 223 MobiDBLite consensus disorder prediction 107 133 - -
Lsi07g01331 223 PANTHER PROTEIN YABBY 6-RELATED 2 173 IPR006780 GO:0007275
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi07g01331 Lsi09g00397 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01331 Lsi-Chr7:19473302 Lsi04g00889 Lsi-Chr4:8841940 7.16E-23 dispersed
Lsi07g01331 Lsi-Chr7:19473302 Lsi09g00397 Lsi-Chr9:4170250 2.04E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25686 PF04690 YABBY 6.90E-23 CL0114 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01331 K25796 - csv:101219601 155.606