Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi07g01340 | ATGGTGGCGTATGCGAATCGGCATGCGTTTAGCTATGTACCGCAAGTTGTTAGAGAGCAGAGAAGAGAGAGGAAGATGCTTAATCAATTGGAGAGTAAGGGTGTGATTAAATCGATTGAGCCGTATCTGTGTCGTGTTTGTGGGAGGAATTTTTATACGAATGAGAAGTTAGTGAATCATTTTAAGCAAATTCATGAGAGTGAGCATAAGAAGAGGTTGAATCAGATTGAATCTGCGAAGGGTAGTAGAAGAGTGAAGTTGCTCGCCAAGTATTCGATGAAAATACAAAAGTATAAGAATGCTGCTAGGGATGTTTTGACTCCCAAAGTGGGATATGGTTTAGCAGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAGACTGTGTCGGATAAGCCTGAAGCTGCTGATGTAGAATTGAGAAACGACATGGTTGAGATTATGGATAGGAAAAGAGCAGAGTGCTTGGTTCTTGTATCAGATGATTCTGATTTTGTGAATGTTTTGAAGGAGGCCAAGTTGAGATGTCTCAGGACGGTTGTTGTAGGGGATTTAAATGATGGGCCATTGAAGAGAAATGCTGATACTGGGTTTTCTTGGAAGGAGATTTTAATGGGGAAGGCTAAAAAGGAGGCTGTGTCTGTTGTGGGAAAATGGAAGGATCGGGATGTTTTGAAGAGATTGGAATGGACATACAATCCTCAGTTGGAGAAGGGTGCTTGGTGGGATCTCAGCTCTGATGCTGAAACTGAAACTGTTTCGTCACCATCATGGAAATGA | 777 | 42.08 | MVAYANRHAFSYVPQVVREQRRERKMLNQLESKGVIKSIEPYLCRVCGRNFYTNEKLVNHFKQIHESEHKKRLNQIESAKGSRRVKLLAKYSMKIQKYKNAARDVLTPKVGYGLADELKRAGFFVKTVSDKPEAADVELRNDMVEIMDRKRAECLVLVSDDSDFVNVLKEAKLRCLRTVVVGDLNDGPLKRNADTGFSWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPQLEKGAWWDLSSDAETETVSSPSWK | 258 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 19575386 | 19576258 | - | Lsi07G013400.1 | Lsi07g01340 | 667762 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi07g01340 | 258 | PANTHER | - | 1 | 249 | - | - | |
| Lsi07g01340 | 258 | Gene3D | - | 3 | 202 | - | - | |
| Lsi07g01340 | 258 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 42 | 70 | IPR013087 | - | |
| Lsi07g01340 | 258 | PANTHER | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN | 1 | 249 | - | - | |
| Lsi07g01340 | 258 | CDD | PIN_LabA-like | 52 | 183 | - | - | |
| Lsi07g01340 | 258 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 44 | 65 | IPR013087 | - | |
| Lsi07g01340 | 258 | SUPERFAMILY | beta-beta-alpha zinc fingers | 41 | 67 | IPR036236 | - | |
| Lsi07g01340 | 258 | Pfam | NYN domain | 114 | 194 | IPR021139 | GO:0004540 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g01533 | Lsi-Chr4:22947274 | Lsi07g01340 | Lsi-Chr7:19575386 | 2.98E-59 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25688 | PF01936 | NYN | 1.10E-09 | CL0280 | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi07g01340 | - | - | cmax:111465052 | 475.707 |