Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01361 ATGACATATAATGAGACGGATAACGGCCGGAGAGGAGAAGTGGTGGCGGAGGATATCGAGGTGGGAATTGGATGTGATGATGACAATGGCGATTATGTTAGATTGAGACAGAGCCCTTGTAATTGTGAACCTGAGGTCTCTTCTGATGGGGGTTCTTCTTCTAAGCCTTGTTCTCCAGGAAGGTCTTTGTGGCTTTGGGTTCGTTTGGTGTTGTTGTTCGTTTTCTTGGTCTCATTAGCTGTTGTTTTCTTCAAATGGGTTGGACCATTTTTCATGAATAAGGAAATAATACCAATTATAAATTGGGAAGCTGAGACGTTTAGTACTCCAGTGCTGGCAGTTTTCGTTTTTGCCTCAGTAGCACTGTTCCCTTCATTGTTTTTACCATCTTCACCTTCTATGTGGCTGGCAGGGATGACATTTGGTTATGGCTTTGGGTTCCTGTTAATTATATCAGCAGTAACTATTGGTGTTTCACTTCCATATTTCATCGGCTCCCTATTCTATCGTAAAATCCAAGGATGGTTAGACAAATATCCTAAGAGAGCTTCTGTTTTAAGATTAGCAGGCGAAGGAGACTGGATTCATCAGTTTCGGGCGGTAGCGCTAATTCGGATTTCTCCATTTCCTTACATTATATATAATTACTGTGCTGTAGCAACCAATGTCAGATATGGTCCGTACATCTTGGGGTCACTGGTTGGAATGGTGCCAGAAATATTTGTTACAATATACACGTACTGGCATTTTAATCAGAACACTGGCAGATGCTTCGCAAAATCAGCAGTTCCTGTCGGCCCCCCAGATCGTGTTCACTGTCATTGGGTTTTGCGTTACTGCAGCTACTACGGTTTTCTTCACTGTATATGCGAAAAGGAAACTCAAGGAATTGCAGACAGAAGACGATCAATTATTGCAGTAGTGAGGCCTCTCTTCCTTAGCCAGGCTAAACTTGCTTATTTGAGCACATAG 972 42.59 MTYNETDNGRRGEVVAEDIEVGIGCDDDNGDYVRLRQSPCNCEPEVSSDGGSSSKPCSPGRSLWLWVRLVLLFVFLVSLAVVFFKWVGPFFMNKEIIPIINWEAETFSTPVLAVFVFASVALFPSLFLPSSPSMWLAGMTFGYGFGFLLIISAVTIGVSLPYFIGSLFYRKIQGWLDKYPKRASVLRLAGEGDWIHQFRAVALIRISPFPYIIYNYCAVATNVRYGPYILGSLVGMVPEIFVTIYTYWHFNQNTGRCFAKSAVPVGPPDRVHCHWVLRYCSYYGFLHCICEKETQGIADRRRSIIAVVRPLFLSQAKLAYLST 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19795820 19799039 + Lsi07G013610.1 Lsi07g01361 667783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01361 323 Pfam SNARE associated Golgi protein 128 246 IPR032816 -
Lsi07g01361 323 PANTHER EXPRESSED PROTEIN 14 246 - -
Lsi07g01361 323 PANTHER SNARE ASSOCIATED GOLGI PROTEIN FAMILY 14 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01361 - - - bhj:120069233 429.483
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01271 Lsi-Chr3:23463588 Lsi07g01361 Lsi-Chr7:19795820 2.92E-06 dispersed
Lsi05g00776 Lsi-Chr5:11078665 Lsi07g01361 Lsi-Chr7:19795820 8.03E-64 dispersed
Lsi07g01361 Lsi-Chr7:19795820 Lsi08g00086 Lsi-Chr8:1782638 2.37E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g454 Blo02g01072 . Bda06g00059 . Bpe05g00611 . . . . Cmo16g01076 . . . . . Cpe14g00850 . . . . . . . . Cla10g00312 Cam10g0327 Cec10g0339 Cco10g0332 Clacu10g0323 Cmu10g1163 Cre10g0573 Cone8ag0349 Cone12ag0343 Cone6ag0723 Cone9ag0729 Lsi07g01361 . . Cme06g02646 . . . . . . . Bma12g00117 . . . . Cma16g01030 . Car16g00981 . . . . . . . . . . . . . . . . . Csa03g00335 Chy06g01990 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006552 1 0 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01361 Lsi_Chr07 FPKM 16.115414 16.839489 18.339987 17.622078 22.717806 18.275936 24.704588 13.693305 13.265126 15.983073