Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01362 ATGAGAAGGGTTCATCGGCTTTGTCTTTCTCATGCTCTTCTGTTCTTGATTCTATTTCTCGTCGGATTTTGCTCTGCCGTCACTGAGAAGGACATTTTGCTTCAATTCAAAGATGCTGTTACAGAGGATCCGTTTGATTTCTTGAGAACTTGGGTCGCCGGCGAGGATCATTGCCGGAGTTTCAACGGCGTGTTCTGTAACTCGGATGGGTTTGTGGAGAGGATTGTTCTATGGAACTCCAGCTTGGCTGGAACTTTGTCGCCTTCCTTGTCGGGATTGAAGTTTTTGAGGACTTTGACATTGTATGGAAATAGATTTACTGGCAATATTCCGATTGAATATGGCGCCATTATTACACTGTGGAAGCTGAACTTGAGCTCCAATGCTTTTTCGGGTTCGGTCCCGGAGTTCATCGGCGATTTGCCGAGCATTCGGTTTCTGGACTTGTCTAGAAATGGCTTTACTGGGGAGATTCCTTCAGCTGTGTTCAAGAATTGTTTTAAAACTAGATTTGTTTCATTTTCTCATAACAGATTTTCAGGTAGGATACCTTCAACAATTTTGAACTGTTTGAGCCTTGAAGGCTTTGATTTCTCAAACAATGTTCTAAGTGGGAGCATTCCTTCGAAACTTTGTGATATTCAAAGATTAGAGTATGTATCTGTGAGAACCAATGCACTGTCTGGGAATGTCCAAGGGCAGTTCTCTGCTTGCCAGAGCTTGAAACTTGTGGATCTGAGTAGCAATTTGTTCACTGGGTCACCGCCGTTCGAGGTTCTCGGATTCAAAAACATCACTTATTTTAATGTCTCATATAACAGGTTTAGTGGGGGAATTGCAGAGGTTGTGGGTTGTAGCAATAATCTGGAAGTTCTTGATGTTTCAGGAAATGGTTTGGATGGAGAGATCCCATTGAGCATTACAACTTGTGGGAGTCTTAAAATCTTAGATTTTGAATCTAACAAGCTGGTTGGGGAGATCCCTGCTGAACTTGCAGATTTGAAAAAGCTTCTCGTGCTTCGGTTGGGTTATAATTCAATCACCGGGACGGTTCCAGCCATTTTCGGAAACATCGAGCTACTTCAGGTTTTGAATTTGCACAATCTCAATCTTGTTGGTGAGATTCCTGATGACATAACCAGTTGCAGATTTCTTCTTGAGCTGGATGTTTCTGGAAATGCATTGGAAGGGGAGATTCCTCAGTCTCTTTACAACATGACATACCTTGAAATTCTTGATCTACACGGTAACCATCTGAACGGAAGCATTCCTTCGACGCTTGGGAACCTCTCGAAACTACAGTTTCTGGATCTATCTCAAAACCGGCTATCCGGTTTGATACCACCTACTCTTGGAAATCTCACATTGCTGCACCACTTCAATGTCTCTTTCAATAACCTTTCAGGCGCCATACCTTCGACGATCCCAAATTTCGGGATTTCTGCATTCTCAAACAATCCTTTCCTTTGTGGTGCTCCCCTGGATCCTTGCTCTGCAGGTAACGCCCCGGGCACGACTTCCATATCGAAGAAACCGAAGGTTCTTAGTCTATCTGCAATCATTGCAATCGTAGCAGCAGTTGTAATCCTGGTCGGGGTTTGCGTGATCTCCATTTTGAACCTTACGGCTCGGACGAGGAAGGCAAGGAGCACCGAAATCATTGAGAGTACACCCCTCGGTTCAACTGATTCAGGTGTCATAATTGGGAAACTGGTTCTTTTTAGCAAAACTTTGCCATCCAAGTATGAAGACTGGGAGGCTGGCACCAAAGCTTTGCTCGACAAGGAATGTCTAATAGGAGGTGGCTCGATCGGCACTGTCTACAGGACAAGTTTTGAGGGCGGCATCTCCATTGCTGTGAAGAAGCTGGAGACTCTAGGGAGGATCAGAAGTCAAGATGAATTCGAGACTGAAATCGGACGTTTGGGAAACATCAAACACCCAAATTTAGTTGCTTTCCAGGGGTACTATTGGTCATCATCAATGCAGTTGATTCTATCCGAATTCGTCCCAAACGGCAATTTGTACGACAATCTACACAGTCTGAATTATCCAGGCACCAGCACAGGCATTGGCAATACAGAGTTACATTGGTCAAGGAGATATAAAATTGCAGTTGGAACAGCTAGAGCTCTTGCTTATCTTCACCATGATTGTAGGCCTCCAATTCTTCACCTCAATATAAAATCAACTAACATATTGTTAGATGAAAACTACGAAGCCAAGTTATCCGATTACGGGTTGGGGAAGTTGCTTCCAGTTTTGGACAATTATATCTTAACGAAATACCATAGCGCCGTAGGGTACGTCGCACCGGAGTTGGCACAAAGTTTGAGAGCTAGTGAAAAATGTGATGTGTATAGTTTTGGAGTGATTTTACTAGAGTTGGTAACAGGGAGGAAGCCAGTTGAGAGTCCAAGAGCAAACCAGGTTGTGATTTTGTGTGAATATGTAAGGGAGTTGTTGGAAAGTGGTTCTGCTTCTGACTGTTTCGATCGGAACTTACGTGGCATTGCTGAAAACGAGCTCATCCAAGTGATGAAATTGGGATTGATTTGTACATCTGAGATCCCTTCGAAGAGACCGAGCATGGCTGAGGTTGTTCAAGTTCTCGAGTCGATACGAAACGGATTAGGATCATAG 2643 43.81 MRRVHRLCLSHALLFLILFLVGFCSAVTEKDILLQFKDAVTEDPFDFLRTWVAGEDHCRSFNGVFCNSDGFVERIVLWNSSLAGTLSPSLSGLKFLRTLTLYGNRFTGNIPIEYGAIITLWKLNLSSNAFSGSVPEFIGDLPSIRFLDLSRNGFTGEIPSAVFKNCFKTRFVSFSHNRFSGRIPSTILNCLSLEGFDFSNNVLSGSIPSKLCDIQRLEYVSVRTNALSGNVQGQFSACQSLKLVDLSSNLFTGSPPFEVLGFKNITYFNVSYNRFSGGIAEVVGCSNNLEVLDVSGNGLDGEIPLSITTCGSLKILDFESNKLVGEIPAELADLKKLLVLRLGYNSITGTVPAIFGNIELLQVLNLHNLNLVGEIPDDITSCRFLLELDVSGNALEGEIPQSLYNMTYLEILDLHGNHLNGSIPSTLGNLSKLQFLDLSQNRLSGLIPPTLGNLTLLHHFNVSFNNLSGAIPSTIPNFGISAFSNNPFLCGAPLDPCSAGNAPGTTSISKKPKVLSLSAIIAIVAAVVILVGVCVISILNLTARTRKARSTEIIESTPLGSTDSGVIIGKLVLFSKTLPSKYEDWEAGTKALLDKECLIGGGSIGTVYRTSFEGGISIAVKKLETLGRIRSQDEFETEIGRLGNIKHPNLVAFQGYYWSSSMQLILSEFVPNGNLYDNLHSLNYPGTSTGIGNTELHWSRRYKIAVGTARALAYLHHDCRPPILHLNIKSTNILLDENYEAKLSDYGLGKLLPVLDNYILTKYHSAVGYVAPELAQSLRASEKCDVYSFGVILLELVTGRKPVESPRANQVVILCEYVRELLESGSASDCFDRNLRGIAENELIQVMKLGLICTSEIPSKRPSMAEVVQVLESIRNGLGS 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19814734 19818697 + Lsi07G013620.1 Lsi07g01362 667784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01362 880 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Lsi07g01362 880 SUPERFAMILY Protein kinase-like (PK-like) 594 872 IPR011009 -
Lsi07g01362 880 Gene3D Ribonuclease Inhibitor 26 189 IPR032675 -
Lsi07g01362 880 Pfam Protein kinase domain 597 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g01362 880 CDD STKc_IRAK 599 874 - -
Lsi07g01362 880 SMART LRR_typ_2 141 165 IPR003591 -
Lsi07g01362 880 SMART LRR_typ_2 406 429 IPR003591 -
Lsi07g01362 880 SMART LRR_typ_2 334 357 IPR003591 -
Lsi07g01362 880 SMART LRR_typ_2 430 453 IPR003591 -
Lsi07g01362 880 Pfam Leucine Rich repeat 286 302 IPR001611 GO:0005515
Lsi07g01362 880 Pfam Leucine Rich Repeat 432 454 IPR001611 GO:0005515
Lsi07g01362 880 SUPERFAMILY L domain-like 74 229 - -
Lsi07g01362 880 PANTHER - 13 877 - -
Lsi07g01362 880 Gene3D Transferase(Phosphotransferase) domain 1 670 878 - -
Lsi07g01362 880 Gene3D Ribonuclease Inhibitor 217 501 IPR032675 -
Lsi07g01362 880 SUPERFAMILY RNI-like 183 478 - -
Lsi07g01362 880 ProSiteProfiles Protein kinase domain profile. 593 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g01362 880 Gene3D Phosphorylase Kinase; domain 1 569 669 - -
Lsi07g01362 880 PANTHER UNNAMED PRODUCT 13 877 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00056 Lsi-Chr7:582004 Lsi07g01362 Lsi-Chr7:19814734 3.33E-168 dispersed
Lsi07g01362 Lsi-Chr7:19814734 Lsi02g00532 Lsi-Chr2:4619376 6.75E-32 dispersed
Lsi07g01362 Lsi-Chr7:19814734 Lsi03g00261 Lsi-Chr3:3236746 8.38E-172 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83804 PF00069 Pkinase 6.20E-35 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01362 - - csv:101212415 1598.95