Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01364 ATGATAATTCAGCCATTGCGGAGTGAAAGTTTTTTTTTAGTGTCTTATTCGACAGTTATACTCGGACTGAGAAAAATGGACAAAAAACAAACCCCTCTTTCCATTTCTCATGGAAACCCTAATTTCGTTGACATTCACGAAGTAGTTCCAAAAGAGGAGGATGAGGAGAAGGAAGAAGAAGAACACGCTCGTGCGGTCGAGAAGCGACCAAAGAAACACAACAATAATCGACTACGACCGCCACCGCCACCACGAGTGGCGGGGGGTTTCGGTCGACAAATGTCGTTAGAAACGGGTTTGAATCGGGATTCGAAAGGGAAGGGTATTGAAAGAATGGCTCTTCCAAGGAGTGGAAGAAGTTTTGGAGGGTTTGATTCAAGCATTATTGAAGGAAAGAAAGCAGATTTTAGTATCTTTAGAACAAAATCAACACTTAGTAAGCAAAATTCTCTATTGCCATTGAAGAAAGATCATCAAATGGATCAGTCTCAAAGAACTTATGGAAGCTCTGAAGGAATGGATGAATCTGTTAATAAAAGTGTTCCTGTTGGAAGATATTTTGCTGCTCTTAGAGGACCTGAACTTGATCAAGACTACGAAGACATTCTTCTCCCAAAAGATGAAAAATGGCCATTCCTTCTCCGATTCCCAATCGGATGCTTTGGTATATGCCTCGGCCTCAGCAGCCAGGCCGTGCTATGGCGGGCGCTCGCGACAAGCCCCGCCACCAAGTTCCTTCACATTTCCCCATTCATCAACCTTGCCATTTGGCTCCTAGCCACAGCTGCTCTTTGCTCAGTTACAGTGGCTTACATTCTCAAATGCATCTTCTATTTTGAAGCTGTTAGGAGAGAGTACTTCCACCCTGTTCGTGTTAACTTCTTCTTTGCCCCTTGGGTCGTCTGCATGTTCCTTGCCATCAGCGTCCCGCCACAGTTCGTGTCGGGGCCGCTTCACCCGGCTGTTTGGTGTGTCTTTATGGGCCCATACTTCTTGCTTGAGCTTAAGATTTACGGGCAATGGTTGTCCGGAGGGAAGCGACGCCTTTGTAAGTTCTTATGGTCAGTTGGGTTTGCACATTATTTAGTGGTGTTTGTGACACTTTATCAAAGGCTGCCGACGAGTGAGGCACTGCCGAAGGAACTGCACCCTGTTTATTCAATGTTCATTGCTGCCCCTTCTGCAGCCAGCATTGCTTGGCAGACCATTTATGATGACTTTGATGGCTTGTCAAGAACTTGCTTCTTCATTGCTTTGTTTCTCTACATTTCTCTTGTTGTTAGGATCAACTTCTTCACTGGATTCAGATTTTCAGTGGCTTGGTGGTCTTACACATTTCCAATGACAACAGCTTCAGTGGCAACCATAAAGTATGCAGAGCATGTCCCTACAGTTGTAAGTAAAGGTCTGGCACTTACCCTTTCTTTCATGTCCTCTACCATGGTGTCTCTTCTCTTTGTCTCCACTCTCCTTCATGCTTTTGTTTGGAAGACACTGTTCCCCAATGACCTGGCCATTGCTATCACAAAGAAGAGACTTATCAAGGATAGGAGACCATTCAAAAAGGCTTATGACCTCAAACGCTGGACAAAGCAAGCTCTTACTAAACACAACAACAAGGATGATGATTTTGATGCACACAGTGAGGCATTTTGA 1656 44.69 MIIQPLRSESFFLVSYSTVILGLRKMDKKQTPLSISHGNPNFVDIHEVVPKEEDEEKEEEEHARAVEKRPKKHNNNRLRPPPPPRVAGGFGRQMSLETGLNRDSKGKGIERMALPRSGRSFGGFDSSIIEGKKADFSIFRTKSTLSKQNSLLPLKKDHQMDQSQRTYGSSEGMDESVNKSVPVGRYFAALRGPELDQDYEDILLPKDEKWPFLLRFPIGCFGICLGLSSQAVLWRALATSPATKFLHISPFINLAIWLLATAALCSVTVAYILKCIFYFEAVRREYFHPVRVNFFFAPWVVCMFLAISVPPQFVSGPLHPAVWCVFMGPYFLLELKIYGQWLSGGKRRLCKFLWSVGFAHYLVVFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWQTIYDDFDGLSRTCFFIALFLYISLVVRINFFTGFRFSVAWWSYTFPMTTASVATIKYAEHVPTVVSKGLALTLSFMSSTMVSLLFVSTLLHAFVWKTLFPNDLAIAITKKRLIKDRRPFKKAYDLKRWTKQALTKHNNKDDDFDAHSEAF 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19837934 19851552 - Lsi07G013640.1 Lsi07g01364 667786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01364 551 CDD TDT_SLAC1_like 215 489 - -
Lsi07g01364 551 PANTHER - 351 548 IPR030183 GO:0006873|GO:0008308|GO:0016021
Lsi07g01364 551 Pfam Voltage-dependent anion channel 349 490 IPR004695 GO:0016021|GO:0055085
Lsi07g01364 551 Pfam Voltage-dependent anion channel 216 320 IPR004695 GO:0016021|GO:0055085
Lsi07g01364 551 MobiDBLite consensus disorder prediction 48 91 - -
Lsi07g01364 551 PANTHER GUARD CELL S-TYPE ANION CHANNEL SLAC1 351 548 - -
Lsi07g01364 551 PANTHER - 40 351 IPR030183 GO:0006873|GO:0008308|GO:0016021
Lsi07g01364 551 MobiDBLite consensus disorder prediction 48 68 - -
Lsi07g01364 551 Gene3D - 212 347 IPR038665 -
Lsi07g01364 551 Gene3D - 348 500 IPR038665 -
Lsi07g01364 551 PANTHER GUARD CELL S-TYPE ANION CHANNEL SLAC1 40 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01364 - - - csv:101212660 892.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01364 Lsi-Chr7:19837934 Lsi09g00066 Lsi-Chr9:551435 8.03E-144 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g448 Blo02g01074 . . . Bpe05g00612 . . . Cmo06g00762 Cmo16g01074 . . . . . Cpe14g00848 . . . . . . . . Cla10g00315 Cam10g0330 Cec10g0343 Cco10g0335 Clacu10g0326 Cmu10g1166 Cre10g0576 . . Cone6ag0727 Cone9ag0733 Lsi07g01364 . . Cme06g02649 . . . . . . Bma05g00792 . . . . Cma06g00740 Cma16g01028 . Car16g00979 Cpe08g00780 . . . . . . . . . . . . . . . . Csa03g00338 Chy06g01987 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008638 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01364 Lsi_Chr07 FPKM 48.173813 47.819225 7.27456 9.125164 16.257895 21.849796 18.831675 8.372223 7.362315 6.970761