Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01367 ATGAATTATTCTTTATTCAATTGTTCTCGTATTTTGCCCGTCTCGTTGACAAATGTGGAGAGGAAAATCAGAAAGAAAGAAAATTCGCTCTTAATGGCATTTCTAAGGTCCACAGCAACAACAACTAGCCTTGCCATAGCAGCATCTGCTTTACCTGCAGCTTTCATCTTCACCGGCCCTTCTTCTTCTTCCTTCCCTTTTCATTTCCCTCAATCCTTCAAACCCAATTCCCTTTCTTTACATTCCTCTCCATTTCCAACTCCAAATTCCTTCGGATTTGTCAGAAACTTTGCCACTCCACCCTCTGCTGTTCGCATGGAGATACCCACTTCGGAATCAATCTCTTCCTCTCAGACAGAGTATATGGTGGATATGAAATGTGAGGGCTGCGTTAATGGCGTCAAGAACAAGTTACAGGGTGTCGATGGTGTAAAGAGTGTTGATGTGGACTTGAGCAATCAAGTGGTTAGGATATTGGGCACAACTCCTGTAAAGACAATGACTGAAGCTTTGGAGCAGACAGGTCGAAAAGCCCGATTAATTGGGCAAGGGGTTCCTGAGGACTTTTTAGTTTCTGCTGCTGTTGCTGAATTTAAAGGTCCGAATATATTTGGCGTGGTAAATATGGAATTGGCCAGGGTCGAAGCTAACTTTAGTGGATTGTCACCTGGAAAACATGGTTGGTCAATCAATGAATTTGGTGATCTGACAAGAGGTGCTGCTAGCACAGGGAAAATCTTTGGTTCTGCAGATTCTGGCCCTAGTAATGAGCCGCTGGGTGACCTGGGAACATTAGATGCCGATGAAAAGGGCGAAGCTTTTTTCTCTGGTGTCAAACAGAAGCTGCGAGTTTCTGATCTTATCGGACGATCAATAGCTGTGTATGGGACCGAAGACAAATCGGATCCAGGCATTGCAGGAGCTGTAGTAGCTCGAAGTGCCGGTGTCGGAGAGAACTACAAGAAGCTATGCACCTGTGATGGGACTACCATATGGGAATCAAGTGACAAGGATTTTGTCACTAGCAAAGTCTAA 1035 44.64 MNYSLFNCSRILPVSLTNVERKIRKKENSLLMAFLRSTATTTSLAIAASALPAAFIFTGPSSSSFPFHFPQSFKPNSLSLHSSPFPTPNSFGFVRNFATPPSAVRMEIPTSESISSSQTEYMVDMKCEGCVNGVKNKLQGVDGVKSVDVDLSNQVVRILGTTPVKTMTEALEQTGRKARLIGQGVPEDFLVSAAVAEFKGPNIFGVVNMELARVEANFSGLSPGKHGWSINEFGDLTRGAASTGKIFGSADSGPSNEPLGDLGTLDADEKGEAFFSGVKQKLRVSDLIGRSIAVYGTEDKSDPGIAGAVVARSAGVGENYKKLCTCDGTTIWESSDKDFVTSKV 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19864738 19869384 - Lsi07G013670.1 Lsi07g01367 667789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01367 344 Pfam Copper/zinc superoxide dismutase (SODC) 212 311 IPR001424 GO:0006801|GO:0046872
Lsi07g01367 344 Gene3D Superoxide dismutase, copper/zinc binding domain 187 312 IPR036423 GO:0006801|GO:0046872
Lsi07g01367 344 CDD HMA 120 179 IPR006121 GO:0046872
Lsi07g01367 344 Gene3D - 104 186 - -
Lsi07g01367 344 ProSiteProfiles Heavy-metal-associated domain profile. 117 180 IPR006121 GO:0046872
Lsi07g01367 344 SUPERFAMILY Cu,Zn superoxide dismutase-like 182 336 IPR036423 GO:0006801|GO:0046872
Lsi07g01367 344 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 39 344 IPR024134 -
Lsi07g01367 344 SUPERFAMILY HMA, heavy metal-associated domain 119 181 IPR036163 GO:0046872
Lsi07g01367 344 PANTHER COPPER CHAPERONE FOR SUPEROXIDE DISMUTASE, CHLOROPLASTIC/CYTOSOLIC 39 344 - -
Lsi07g01367 344 Pfam Heavy-metal-associated domain 121 177 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01367 K04569 CCS; copper chaperone for superoxide dismutase - csv:101206552 518.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00184 Lsi-Chr6:1985233 Lsi07g01367 Lsi-Chr7:19864738 5.15E-09 dispersed
Lsi07g01367 Lsi-Chr7:19864738 Lsi02g00803 Lsi-Chr2:7414925 4.21E-08 dispersed
Lsi07g01367 Lsi-Chr7:19864738 Lsi11g00482 Lsi-Chr11:5089329 1.44E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g438 . Blo03g00183 Bda06g00061 . . Bpe07g00137 . . . . . . . . . . . Bhi11g00229 . . . . . . Cla10g00318 Cam10g0333 Cec10g0347 Cco10g0339 Clacu10g0330 Cmu10g1170 Cre10g0580 . . Cone6ag0730 Cone9ag0734 Lsi07g01367 . . Cme06g02652 . . . . . . . Bma12g00113 . . . Cma06g00735 . Car06g00654 . Cpe08g00784 . . . . . . . . . . . . . . . . Csa03g00341 Chy06g01984 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009814 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01367 Lsi_Chr07 FPKM 57.452595 60.655624 73.135796 78.892723 39.673706 36.408493 40.857578 110.340385 111.447876 114.811478