Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01373 ATGTTTTCATGCTACAAGAAAATCGTTTCTCTTCTGCTCGTAATCACTTTCACCAGTCAATTGATCGAATCTCAAACCCAAATCGCCCCCAATTTTGACAAATCGCTTCTCCCTTTCGGCTCACAATCAATCACAGGAACTTTCTCCACCCGCTGCAATCGCAATGAATTCATCTCCAGTGCGAGTGTCACGATGGTCAATAACTGCTCCTTCACCGTCTGGGCCGCCGCCATACCAGGCGGTGGCCACCGTCTCGACAGCCGCCAGACTTGGCTCTTAAACGTACCTGCCCGCACGACAGGAGGACGAATTTGGGGCAGAACAAATTGTTCCTTCGACAACTCAGGGAAAGGAAATTGCGAGACCGGCGACTGCGGCGGCGTTCTTCAGTGCAAAACCAACGGCTCACCGCCCAACACTCTGGCTGAATTTGCCCTCAATCAATTAAACGATCTGGATTTCTTCGACATCTCTCTGGTCGACGGTTTCAATATTCCCATGGAATTCAAACCGACGTCTAAAAACGGATGTAGCAGGGGCGTACGTTGCGCCGCTGATATCAAGGGGCAGTGTCCGGCGGAGCTGAGAGCGGCCGGCGGGTGTAACAACCCGTGCACGGTGTTCGGAACAGAGGAGTATTGCTGCAATAAAGGGAAGTGTGGGCCCACAGAGTATTCGAAGTTTTTCAAAGAGAGGTGTCCTGATGCTTACAGTTACCCACTGGATGACGCCACCAGCTCATTTACGTGTCCTGGAGGAGCTTGTGGTTATGGAAACTTGTTCACAAACGGCTACGGCGTCGACACGGTGGCTCTAAGCTCTACCCTCTTCAACAATGGCTACGCTTGTGGAACTTGCTTTCAAATCAAATGCGCCCAATCCAAAGCTTGTTACCCTAATGTTGCTTTCACGACGGTGACTGCGACCAACCTTTGCCCGCCGAATTGGGCCAAACCGTCCAACAACGGCGGGTGGTGCAACCCTCCGAGGGTTCACTTCGACATGTCAAAACCAGCCTTTATGAAGATCGCCAATTGGAAGGCTGGGATCATCCCCGTCGTGTACCGACGAGTCCCGTGCGGGAAAAAGGGCGGCCTTAGATTCACATTACAAGGAAATGGTTACTGGCTTTTGGCGTACGTGATGAATGTCGGCGGCGGCGGAGACGTGTCAGGAATGTGGGTGAAAGGTAGCAAAACAGGGTGGATCAAAATGAGCCATAATTGGGGAGCTTCATATCAAGCATTCTCATCTTTGGTTGGCCAATCTTTGTCTTTTAGAGTCACTTCTTACACAACCAAAGAAACCATCACAATTTGGAATGTTGCACCTTCTAATTGGAGGTTTGGTTTGACCTACAATGCCAACATCAACTTTCGTTGA 1383 50.47 MFSCYKKIVSLLLVITFTSQLIESQTQIAPNFDKSLLPFGSQSITGTFSTRCNRNEFISSASVTMVNNCSFTVWAAAIPGGGHRLDSRQTWLLNVPARTTGGRIWGRTNCSFDNSGKGNCETGDCGGVLQCKTNGSPPNTLAEFALNQLNDLDFFDISLVDGFNIPMEFKPTSKNGCSRGVRCAADIKGQCPAELRAAGGCNNPCTVFGTEEYCCNKGKCGPTEYSKFFKERCPDAYSYPLDDATSSFTCPGGACGYGNLFTNGYGVDTVALSSTLFNNGYACGTCFQIKCAQSKACYPNVAFTTVTATNLCPPNWAKPSNNGGWCNPPRVHFDMSKPAFMKIANWKAGIIPVVYRRVPCGKKGGLRFTLQGNGYWLLAYVMNVGGGGDVSGMWVKGSKTGWIKMSHNWGASYQAFSSLVGQSLSFRVTSYTTKETITIWNVAPSNWRFGLTYNANINFR 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19983160 19994538 - Lsi07G013730.1 Lsi07g01373 667795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01373 460 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 252 365 IPR007112 -
Lsi07g01373 460 SUPERFAMILY PHL pollen allergen 362 454 IPR036749 -
Lsi07g01373 460 Gene3D - 216 360 IPR036908 -
Lsi07g01373 460 Gene3D - 361 460 IPR036749 -
Lsi07g01373 460 SUPERFAMILY Osmotin, thaumatin-like protein 62 256 IPR037176 -
Lsi07g01373 460 PRINTS Expansin signature 304 314 IPR002963 GO:0009664
Lsi07g01373 460 PRINTS Expansin signature 340 353 IPR002963 GO:0009664
Lsi07g01373 460 PRINTS Expansin signature 364 376 IPR002963 GO:0009664
Lsi07g01373 460 PRINTS Expansin signature 441 457 IPR002963 GO:0009664
Lsi07g01373 460 PRINTS Expansin signature 264 278 IPR002963 GO:0009664
Lsi07g01373 460 PRINTS Expansin signature 376 397 IPR002963 GO:0009664
Lsi07g01373 460 PRINTS Expansin signature 323 340 IPR002963 GO:0009664
Lsi07g01373 460 SUPERFAMILY Barwin-like endoglucanases 249 383 IPR036908 -
Lsi07g01373 460 Pfam Thaumatin family 67 256 IPR001938 -
Lsi07g01373 460 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 375 455 IPR007117 -
Lsi07g01373 460 ProSitePatterns Thaumatin family signature. 116 131 IPR017949 -
Lsi07g01373 460 Pfam Expansin C-terminal domain 367 444 IPR007117 -
Lsi07g01373 460 PANTHER EXPANSIN-A7 243 460 - -
Lsi07g01373 460 Gene3D Thaumatin 62 203 IPR037176 -
Lsi07g01373 460 SMART dpbb_1 269 355 IPR007112 -
Lsi07g01373 460 PRINTS Expansin/Lol pI family signature 348 364 IPR007118 GO:0005576
Lsi07g01373 460 PRINTS Expansin/Lol pI family signature 402 416 IPR007118 GO:0005576
Lsi07g01373 460 PRINTS Expansin/Lol pI family signature 273 291 IPR007118 GO:0005576
Lsi07g01373 460 PRINTS Expansin/Lol pI family signature 441 455 IPR007118 GO:0005576
Lsi07g01373 460 PRINTS Expansin/Lol pI family signature 251 269 IPR007118 GO:0005576
Lsi07g01373 460 PANTHER EXPANSIN-A15 243 460 IPR002963 GO:0009664
Lsi07g01373 460 SMART tha2 63 256 IPR001938 -
Lsi07g01373 460 Pfam Lytic transglycolase 269 355 IPR009009 -
Lsi07g01373 460 ProSiteProfiles Thaumatin family profile. 60 261 IPR001938 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi07g01373 Lsi09g00326 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01373 Lsi-Chr7:19983160 Lsi09g00294 Lsi-Chr9:3040586 3.29E-96 dispersed
Lsi09g00292 Lsi-Chr9:3032278 Lsi07g01373 Lsi-Chr7:19983160 4.19E-62 dispersed
Lsi09g00295 Lsi-Chr9:3048392 Lsi07g01373 Lsi-Chr7:19983160 3.02E-65 dispersed
Lsi09g00326 Lsi-Chr9:3404485 Lsi07g01373 Lsi-Chr7:19983160 8.52E-64 dispersed
Lsi07g01373 Lsi-Chr7:19983160 Lsi07g01374 Lsi-Chr7:19994991 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01373 - - bhj:120091854 451.44