Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01376 ATGGCTGGTAAAATTTTTGAAACCTTGTCTTTTGGTGGGTCTCAACATGGTCAAGGTAATCAATCTTTGCCATTTTCCTCTGGAAATGCTTCATTGAAGATCTTGCTATTACATGGTTATTTAGACGTTTGGGTCAAGGAAGCTAAGAACCTTCCAAATTTAGATATGTTTCACAAGACTCTTGGAGATGTGTTTTCAAAAATGTCTTTTAAGAGTTCCAAAAGCAGTGATGGGCAAAAGCCTCAAAAAGTTACTAGTGATCCTTATGTGACCATTTCTGTGTCAAATGCTGTGATTGGAAGAACTTTTGTGATTGATAATAGTGAAAATCCTGTTTGGATGCAACATTTTAATGTTCCTGTAGCTCATTATGGTGCTGAAGTGCATTTTGTTGTTAAAGACCATGATGTTGTGGGATCACAAATCATGGGTCTTGTTGCAATTCCTGTTGAACAATTGTATTCAGGAGCCATAGTTGAAGGAACCTACCCAATTTTAAATAGTAGTAGGAAGCCCTGTAAGCCTGGGGCAGTCTTGAGTTTGTCAATTCAGTATACTCCGGCCGACCGAGCAGCCATTTTTCATGGTGGAATGTATGCGTCTCCTGATCACCAGGGAGTTTCAGGCACATACTTCCCTCTTAGGAAGGGGGGTAAAGTTACATTGTACCAAGATGCTCATGTTGAAGATGGTTGTCTTCCAACAGATTTTAGGCTTCCTGGTGGAGTTCAATATGAACATAGGAGCTGTTGGGACGACATCTCTGAATCGATTAGTCAGGCTCGTCGTTTGATCTATATTACGGGCTGGTCTGTGTACCATAGTGTTAAATTGGTTAGAGATGGAACGGCCAAAGAATGCATATTAGGGGACCTTCTTAAAGCCAAGTCCCAAGAAGGAGTAAGAGTATTGCTTCTTATATGGGATGATCCAACTTCAACAAGTATGTTGGGATATAAAACGTACAGGTTTTATAATGAAGCTGGAACCATCTATACGCACCATCAGAAGACAGTTATTGTAGATGCTGATGCTGGTAATTACAAAAGAAAAATTGTAGCTTTTGTTGGAGGTCTTGATTTATGTTTGGGCCGATATGATACCTCGAGACATCCTCTTTTCCGGACATTGCAAACTACACATGTGGATGACTTCCATAACCCTAATTTTACGTTTGTATATATCTTGAATTTAGTTCATAAGTTATTTTCAGTTCTTTTCTCAAAATACTTCTTTTGGAATTACTTAAGTTCAACCATAATTCATCAAAACTTTTTCAATAAGCCTTGTGCTTTTGAGTGGCTGTGCTGCCCTGAAGATAATGGTGTCATTGGACCAACTACTGGTTGTCCAAGAGAACCATGGCATGATTTGCACTCCAAGATTGACGGTCCAGCGGCGTATGATGTACTTGCAAATTTTGAGGAGCGTTGGATGAGAGCTTCAGAGCCTCATGGGCTTAAAAAGCTAAAGAAGTTGCATGAAGATGTATTGCTCAAAATTGAAAGAATTCCTGAAATTTTGGGAATTGCTGATGTTTCTCAACTGTGCCGTAATGATCGAGAAGCTTGGAACGTCCAGATTTTTCGCTCAATCGATTCCAACTCCGTAAAAGGATTTCCTGACAAACCAAAAGATGCTATAAGTAGGAACTTAGTATGTGGAAAGAATGTGATGATAGACATGAGTATACATTCAGCATATGTTAGTGCAATTCGAGCTGCCCAACGATTCATTTACATTGAAAACCAATACTTCCTTGGGTCATCTTATAATTGGAGTGCTCACAAAGACTTGGGGGCTAATAACTTAATACCAATGGAAATAGCCCTTAAGATTGTGGAGAAAATCAAAGCTAAAGAAAGGTTTTCAGCATATGTGGTTATTCCAATGTGGCCAGAAGGTGCTCCTACAAGCACTCCTATTCAAAGAATTCTTTTCTGGCAGAGTAGGACAATGCAAATGATGTATGAAATGATATATAAGGCATTAGAGGAGGTTGGACTTCATAAAACATATGAGCCTCAAGACTACTTAAATTTCTTTTGCCTTGGAAACCGTGAGGTGCTCGATGTCAGAGACGTTGTTGAAGCCGGGAATGGAGAAAAAAATGCTCAATTGCTTGTTCGTAAGAGTCGACGCTTTATGATCTATGTTCATTCTAAAGGAATGATAGTAGATGATGAGTATGTCCTATTGGGATCAGCAAATATCAACCAACGGTCCCTTGAAGGTACCAGAGACACTGAAATAGCAATGGGCGCATATCAGCCTCGTCATACATGGTCATCGAGCAAACGCTCGAGCCCACGTGGTCAGGTCTATGGATATAGAATGTCTTTATGGGCAGAGCACACAGGAACAGTGGAGGAATGTTTTGAAAGACCAGAGAGTATTGAATGTGTAAGAAGAATCAGGTCATTGGGTGAGAGAAATTGGAGACAATATGCAGCTGAGGAAGTGAGTGAAATGAGAAGTCATCTTCTTAAATATCCATTGCAAGTTGATCCAACTGGTAAGGTAACCCATCTTCCTGGTTCTGAAACCTTCCCTGACCTTGGTGGCAATATATTGGGAACATTCACAGTCATACAAGAAAATCTTACAATTTGA 2613 39.84 MAGKIFETLSFGGSQHGQGNQSLPFSSGNASLKILLLHGYLDVWVKEAKNLPNLDMFHKTLGDVFSKMSFKSSKSSDGQKPQKVTSDPYVTISVSNAVIGRTFVIDNSENPVWMQHFNVPVAHYGAEVHFVVKDHDVVGSQIMGLVAIPVEQLYSGAIVEGTYPILNSSRKPCKPGAVLSLSIQYTPADRAAIFHGGMYASPDHQGVSGTYFPLRKGGKVTLYQDAHVEDGCLPTDFRLPGGVQYEHRSCWDDISESISQARRLIYITGWSVYHSVKLVRDGTAKECILGDLLKAKSQEGVRVLLLIWDDPTSTSMLGYKTYRFYNEAGTIYTHHQKTVIVDADAGNYKRKIVAFVGGLDLCLGRYDTSRHPLFRTLQTTHVDDFHNPNFTFVYILNLVHKLFSVLFSKYFFWNYLSSTIIHQNFFNKPCAFEWLCCPEDNGVIGPTTGCPREPWHDLHSKIDGPAAYDVLANFEERWMRASEPHGLKKLKKLHEDVLLKIERIPEILGIADVSQLCRNDREAWNVQIFRSIDSNSVKGFPDKPKDAISRNLVCGKNVMIDMSIHSAYVSAIRAAQRFIYIENQYFLGSSYNWSAHKDLGANNLIPMEIALKIVEKIKAKERFSAYVVIPMWPEGAPTSTPIQRILFWQSRTMQMMYEMIYKALEEVGLHKTYEPQDYLNFFCLGNREVLDVRDVVEAGNGEKNAQLLVRKSRRFMIYVHSKGMIVDDEYVLLGSANINQRSLEGTRDTEIAMGAYQPRHTWSSSKRSSPRGQVYGYRMSLWAEHTGTVEECFERPESIECVRRIRSLGERNWRQYAAEEVSEMRSHLLKYPLQVDPTGKVTHLPGSETFPDLGGNILGTFTVIQENLTI 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20013246 20019888 + Lsi07G013760.1 Lsi07g01376 667798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01376 870 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 330 365 IPR001736 GO:0003824
Lsi07g01376 870 PANTHER PHOSPHOLIPASE D BETA 1-LIKE 445 870 - -
Lsi07g01376 870 SMART pld_4 715 742 IPR001736 GO:0003824
Lsi07g01376 870 SMART pld_4 330 365 IPR001736 GO:0003824
Lsi07g01376 870 Gene3D Endonuclease Chain A 240 497 - -
Lsi07g01376 870 PANTHER PHOSPHOLIPASE D BETA 1-LIKE 6 322 - -
Lsi07g01376 870 PANTHER PHOSPHOLIPASE D BETA 1-LIKE 326 391 - -
Lsi07g01376 870 PIRSF PLD_plant 26 327 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lsi07g01376 870 PIRSF PLD_plant 323 398 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lsi07g01376 870 PIRSF PLD_plant 440 870 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lsi07g01376 870 Gene3D Endonuclease Chain A 508 771 - -
Lsi07g01376 870 SUPERFAMILY Phospholipase D/nuclease 564 802 - -
Lsi07g01376 870 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 187 IPR035892 -
Lsi07g01376 870 Gene3D C2 domain 34 171 IPR035892 -
Lsi07g01376 870 PANTHER PHOSPHOLIPASE D 445 870 IPR015679 -
Lsi07g01376 870 Pfam C2 domain 39 165 IPR000008 -
Lsi07g01376 870 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 715 742 IPR001736 GO:0003824
Lsi07g01376 870 PANTHER PHOSPHOLIPASE D 6 322 IPR015679 -
Lsi07g01376 870 PANTHER PHOSPHOLIPASE D 326 391 IPR015679 -
Lsi07g01376 870 ProSiteProfiles C2 domain profile. 15 163 IPR000008 -
Lsi07g01376 870 Pfam Phospholipase D Active site motif 716 742 IPR001736 GO:0003824
Lsi07g01376 870 Pfam Phospholipase D Active site motif 331 365 IPR001736 GO:0003824
Lsi07g01376 870 SMART C2_3c 40 162 IPR000008 -
Lsi07g01376 870 CDD C2_plant_PLD 35 186 - -
Lsi07g01376 870 SUPERFAMILY Phospholipase D/nuclease 207 482 - -
Lsi07g01376 870 Pfam Phospholipase D C terminal 790 860 IPR024632 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01376 Lsi-Chr7:20013246 Lsi09g01919 Lsi-Chr9:28031240 0 dispersed
Lsi07g01376 Lsi-Chr7:20013246 Lsi01g00563 Lsi-Chr1:4495939 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01376 K01115 - csv:101208016 1546.56