Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01383 TCACGGCTGTCATTAACGCTAAGAATAAAATGGATTTTGCCCTTCTATAAAGAAAAAAAACCAAGCCGAGGGCGCGAAGCGGGAACTGGAAGGGCTCGAGTTTTTTCCTGTATTTGTTCTACTCATCCTCGAGCATCCCCATTCATCTGTGCAAAATCCATGGCGTCTTCTTCAGGCGGCAGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCACCAAGGTCGTTGACATTGTGGGCAATGAAGATGCAGTTTCTCGCCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCACGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAATTTCTTACTTTAGGTTCCATTGTTTATTTATTACTTTTGGTGATGGTTATGATTGTGGAAATAATCCAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACACGTTTTGCCCTTGCATATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTGCTTCAAGCAGAAAAGGTATCGATTATTTTTTATAATGCTTTGAGCTGCATTCCAGATCCAGACTACATTTCTGTTGTTACAAATAAAATCACTCTGCTAATTTTAATTGCTGTTATTGAAAACTTCATACTGCTTAATTATCTTCTGAAGAAAGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGCAATGTGCTTGAAGGTAAATTTGACGATGCTTGTGCAGGTCTGAAGCAACTGTACGACTTAGGCTATTCTCCCACTGACATAATTACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGATGTGCGGCCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCAAAAGCCCCATGA 1302 42.93 SRLSLTLRIKWILPFYKEKKPSRGREAGTGRARVFSCICSTHPRASPFICAKSMASSSGGSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKFLTLGSIVYLLLLVMVMIVEIIQHDNWSTTSFEAYNGNIFKHNTFCPCICAIVRFSRLTDQEILGRLMVVLQAEKVSIIFYNALSCIPDPDYISVVTNKITLLILIAVIENFILLNYLLKKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQMCGLLAKLSMVRETAKAP 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20093678 20100627 - Lsi07G013830.1 Lsi07g01383 667805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01383 433 CDD AAA 83 172 - -
Lsi07g01383 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 335 IPR027417 -
Lsi07g01383 433 Pfam Replication factor C C-terminal domain 337 422 IPR013748 -
Lsi07g01383 433 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 288 431 - -
Lsi07g01383 433 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 60 246 - -
Lsi07g01383 433 Gene3D - 287 336 - -
Lsi07g01383 433 PANTHER REPLICATION FACTOR C SUBUNIT 2 288 431 - -
Lsi07g01383 433 PANTHER REPLICATION FACTOR C SUBUNIT 2 60 246 - -
Lsi07g01383 433 SUPERFAMILY post-AAA+ oligomerization domain-like 336 427 IPR008921 GO:0003677|GO:0006260
Lsi07g01383 433 CDD HLD_clamp_RFC 289 334 - -
Lsi07g01383 433 Gene3D - 337 429 - -
Lsi07g01383 433 Gene3D - 61 232 IPR027417 -
Lsi07g01383 433 SMART AAA_5 100 242 IPR003593 -
Lsi07g01383 433 Pfam ATPase family associated with various cellular activities (AAA) 104 158 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01383 Lsi-Chr7:20093678 Lsi08g00447 Lsi-Chr8:12109074 7.96E-35 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01383 K10755 - csv:101208984 510.375