Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01384 ATGGCATCTTCTAGGTCCCCGAATGGATCTTCCGACGATATCCTCGATACCTCCCCTTTGATGGGGAATCCCAACCGGTTGCCGGACGATACGCATTCGGGTAGGAGATTTGTGCAGAGGCAAAGTTTGCGTCAGGCGGCGAGGTTTCTTAGGCAGGCTAGTAGTCGGAGGACGATGCGTGAGCCGTCTATGTTGGTCCGAGAGACGGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCATATTCAAAGCCGGTTGTGATCCTTGACATCGTCTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCGTTTTGGTTCTCAGCCGATATGAGTCTCCTTCAATGCCTTTGAGACTGTGGATCGTGGGGTATGCGTTTCAATGTGTTCTCCATATGGTGTGTGTTTGTGTTGAGTATCGTCGCCGCCGGCAGCTACGATATTCGACCTTCAATTCAATGGATGAGGGAAATTCTGCACGCGGGATTTCGGGTTTGGGATCGAGGGCTAACTCGAGTCATTATGTATCATTGGCTCAATTGGATGAAAACGATAGCAGTGTAGCAAAGCACCTTGAATCTGCAAATACAATGTTCTCCTTCATCTGGTGGATTATTGGATTCTATTGGGTATCTGCAGGAGGACAATCTTTAGCACACGTCTCTCCTTTGCTTTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCTGTTTGCTGCTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCAGACCAGGAAGGAGCGACCAAAGAAGATGTTGAACAGTTGTCAAAATTTAAATTCAGAAAGGTTGACAACGCCGAGAAATTCTCCACTGATGTACAGGAACCTCTCGGTGGGATAATGACCGAGTGTGGTACAGATTCACCCATTGAACGCGCCCTCTCACAGGAGGATGCGGAGTGTTGCATCTGCCTTTCTGCATACGAGGATGGTGTCGAGCTACGAGAGCTCCCATGTGGTCACCACTTCCACTGTGCCTGCGTCGATAAGTGGCTGTATATTAACGCCACCTGTCCTCTCTGCAAGTACAACATCCTGAAAAATAGCAATCTTGCTCATGAGGAAGTTTAA 1152 47.57 MASSRSPNGSSDDILDTSPLMGNPNRLPDDTHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSRYESPSMPLRLWIVGYAFQCVLHMVCVCVEYRRRRQLRYSTFNSMDEGNSARGISGLGSRANSSHYVSLAQLDENDSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVDNAEKFSTDVQEPLGGIMTECGTDSPIERALSQEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKNSNLAHEEV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20105016 20110020 + Lsi07G013840.1 Lsi07g01384 667806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01384 383 CDD RING-H2_RNF111_like 327 371 - -
Lsi07g01384 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 375 IPR013083 -
Lsi07g01384 383 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Lsi07g01384 383 SUPERFAMILY RING/U-box 319 375 - -
Lsi07g01384 383 SMART ring_2 328 368 IPR001841 -
Lsi07g01384 383 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 383 - -
Lsi07g01384 383 MobiDBLite consensus disorder prediction 1 33 - -
Lsi07g01384 383 Pfam Ring finger domain 327 369 IPR001841 -
Lsi07g01384 383 MobiDBLite consensus disorder prediction 1 18 - -
Lsi07g01384 383 PANTHER TARGET OF ERK KINASE MPK-1 6 383 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02011 Lsi-Chr5:27164468 Lsi07g01384 Lsi-Chr7:20105016 2.17E-152 dispersed
Lsi07g00769 Lsi-Chr7:8383086 Lsi07g01384 Lsi-Chr7:20105016 1.93E-13 dispersed
Lsi07g01384 Lsi-Chr7:20105016 Lsi09g00690 Lsi-Chr9:7832170 1.47E-117 dispersed
Lsi07g01384 Lsi-Chr7:20105016 Lsi03g01645 Lsi-Chr3:27631109 5.81E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01384 - - csv:101209228 716.842