Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi07g01384 | ATGGCATCTTCTAGGTCCCCGAATGGATCTTCCGACGATATCCTCGATACCTCCCCTTTGATGGGGAATCCCAACCGGTTGCCGGACGATACGCATTCGGGTAGGAGATTTGTGCAGAGGCAAAGTTTGCGTCAGGCGGCGAGGTTTCTTAGGCAGGCTAGTAGTCGGAGGACGATGCGTGAGCCGTCTATGTTGGTCCGAGAGACGGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCATATTCAAAGCCGGTTGTGATCCTTGACATCGTCTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCGTTTTGGTTCTCAGCCGATATGAGTCTCCTTCAATGCCTTTGAGACTGTGGATCGTGGGGTATGCGTTTCAATGTGTTCTCCATATGGTGTGTGTTTGTGTTGAGTATCGTCGCCGCCGGCAGCTACGATATTCGACCTTCAATTCAATGGATGAGGGAAATTCTGCACGCGGGATTTCGGGTTTGGGATCGAGGGCTAACTCGAGTCATTATGTATCATTGGCTCAATTGGATGAAAACGATAGCAGTGTAGCAAAGCACCTTGAATCTGCAAATACAATGTTCTCCTTCATCTGGTGGATTATTGGATTCTATTGGGTATCTGCAGGAGGACAATCTTTAGCACACGTCTCTCCTTTGCTTTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCTGTTTGCTGCTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCAGACCAGGAAGGAGCGACCAAAGAAGATGTTGAACAGTTGTCAAAATTTAAATTCAGAAAGGTTGACAACGCCGAGAAATTCTCCACTGATGTACAGGAACCTCTCGGTGGGATAATGACCGAGTGTGGTACAGATTCACCCATTGAACGCGCCCTCTCACAGGAGGATGCGGAGTGTTGCATCTGCCTTTCTGCATACGAGGATGGTGTCGAGCTACGAGAGCTCCCATGTGGTCACCACTTCCACTGTGCCTGCGTCGATAAGTGGCTGTATATTAACGCCACCTGTCCTCTCTGCAAGTACAACATCCTGAAAAATAGCAATCTTGCTCATGAGGAAGTTTAA | 1152 | 47.57 | MASSRSPNGSSDDILDTSPLMGNPNRLPDDTHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSRYESPSMPLRLWIVGYAFQCVLHMVCVCVEYRRRRQLRYSTFNSMDEGNSARGISGLGSRANSSHYVSLAQLDENDSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVDNAEKFSTDVQEPLGGIMTECGTDSPIERALSQEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKNSNLAHEEV | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 20105016 | 20110020 | + | Lsi07G013840.1 | Lsi07g01384 | 667806 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi07g01384 | 383 | CDD | RING-H2_RNF111_like | 327 | 371 | - | - | |
Lsi07g01384 | 383 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 313 | 375 | IPR013083 | - | |
Lsi07g01384 | 383 | ProSiteProfiles | Zinc finger RING-type profile. | 328 | 369 | IPR001841 | - | |
Lsi07g01384 | 383 | SUPERFAMILY | RING/U-box | 319 | 375 | - | - | |
Lsi07g01384 | 383 | SMART | ring_2 | 328 | 368 | IPR001841 | - | |
Lsi07g01384 | 383 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 6 | 383 | - | - | |
Lsi07g01384 | 383 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Lsi07g01384 | 383 | Pfam | Ring finger domain | 327 | 369 | IPR001841 | - | |
Lsi07g01384 | 383 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Lsi07g01384 | 383 | PANTHER | TARGET OF ERK KINASE MPK-1 | 6 | 383 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g02011 | Lsi-Chr5:27164468 | Lsi07g01384 | Lsi-Chr7:20105016 | 2.17E-152 | dispersed | |
Lsi07g00769 | Lsi-Chr7:8383086 | Lsi07g01384 | Lsi-Chr7:20105016 | 1.93E-13 | dispersed | |
Lsi07g01384 | Lsi-Chr7:20105016 | Lsi09g00690 | Lsi-Chr9:7832170 | 1.47E-117 | dispersed | |
Lsi07g01384 | Lsi-Chr7:20105016 | Lsi03g01645 | Lsi-Chr3:27631109 | 5.81E-91 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi07g01384 | - | - | csv:101209228 | 716.842 |