Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01388 ATGTGGCTTCTTTTGATTGGAGCTATTGTTGTTTTAAGTTTTACACACTGGCTTTATAGTTGGAGAAATCCCAAATGTAATGGAAAACTTCCACCAGGTTCAATGGGTTTGCCCCTACTTGGTGAAACCCTGCAGTTCTTTGCTCCCAATACCTCCTCTGATATTCCTCCTTTCATTAGAAAAAGGATGGATAGGTATGGACCTATATTCAGAACAAGTTTGGTGGGAAGACCGCTGATTGTCTCAACAGACCCCGACTTGAATTACTTAATCTTTCAACAAGAGGGACAATTGTTCCAGAGCTGGTATCCTGATACCTTCACAGAGATATTTGGAAAACAAAATGTTGGTTCGTTGCACGGCTTCATGTATAAATATCTAAAGAACATGGTTCTACATCTTTTTGGCCCTGAAAGTCTGAGAAAGATGATACCTGAAGTTGAGGCTGTAGCAACCAGAAGATTGAGACAATGGTCATCTCATAACTCAATTGAATTGAAGGATAAGACTGCAAGTATGATTTTTGATCTGACTGCAAAGAAGCTGATTAGTTATGATTCAGAAAGTTCTTCAGAGAATTTGAGAGAGAACTTTGTTGCATTCATACAGGGCTTGATCTCCTTCCCTCTAAATGTTCCCGGAACTGCTTATAACAAATGCTTACAGGGCAGGAAAAGAGCAATGAGGATGCTGAAGGACATGTTACAAGAAAGACGGGCAAATCCAAGGAAACAACAAATAGATTTCTTCGATTTTGTTCTTGAAGAACTGGAGAAAGATGGAACTCTTCTTACTGAGGAAATTGCTTTGGACCTTATGTTTGTACTACTTTTTGCAAGCTTTGAAACTACATCACTTGCTATTACAGCAGCCATCAAATTTCTCCTCAACAATCCTCATGTTCTGGAGGAGCTGACGGCTGAACATGAAGGAATATTGAAGAGAAGGGAAAATTCAGATTCTGGGCTTACATGGGGGGAATACAAATCCATGACATTCACATTTCAGTTCATCAATGAAACTGTGAGACTGGCAAATATAGTTCCAGGAATCTTTCGAAAAGCACTGAAAGATATCCAGTTTAAGGGATATACCATTCCATCTGGTTGGGCTGTTATGGTCTGCCCTCCAGCCGTGCACTTAAATCCAGAAAAATACGTCGACCCCCTTGCTTTTAACCCGTGGCGATGGGAGAAATCTGAACTGAATGGAGCCTCTAAACATTTCATGGCTTTTGGTGGTGGCATGAGGTTCTGTGTTGGTACAGATTTTACCAGAGTGCAAATGGCTGTGTTTCTCCATTGCCTGGTTACAAAGTACAGGTTCAAAGCAATTAAAGGAGGAAACATCGTTCGAACTCCCGGTTTACAGTTTCCCGACGGCTTTCACGTTCAGATAATGGAGAAATAA 1410 40.78 MWLLLIGAIVVLSFTHWLYSWRNPKCNGKLPPGSMGLPLLGETLQFFAPNTSSDIPPFIRKRMDRYGPIFRTSLVGRPLIVSTDPDLNYLIFQQEGQLFQSWYPDTFTEIFGKQNVGSLHGFMYKYLKNMVLHLFGPESLRKMIPEVEAVATRRLRQWSSHNSIELKDKTASMIFDLTAKKLISYDSESSSENLRENFVAFIQGLISFPLNVPGTAYNKCLQGRKRAMRMLKDMLQERRANPRKQQIDFFDFVLEELEKDGTLLTEEIALDLMFVLLFASFETTSLAITAAIKFLLNNPHVLEELTAEHEGILKRRENSDSGLTWGEYKSMTFTFQFINETVRLANIVPGIFRKALKDIQFKGYTIPSGWAVMVCPPAVHLNPEKYVDPLAFNPWRWEKSELNGASKHFMAFGGGMRFCVGTDFTRVQMAVFLHCLVTKYRFKAIKGGNIVRTPGLQFPDGFHVQIMEK 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20145497 20149003 - Lsi07G013880.1 Lsi07g01388 667810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01388 469 SUPERFAMILY Cytochrome P450 27 465 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g01388 469 PANTHER CYTOCHROME P450 26 8 466 - -
Lsi07g01388 469 Pfam Cytochrome P450 31 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g01388 469 PRINTS P450 superfamily signature 279 296 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g01388 469 PRINTS P450 superfamily signature 419 430 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g01388 469 PRINTS P450 superfamily signature 410 419 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g01388 469 PRINTS P450 superfamily signature 336 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g01388 469 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 412 421 IPR017972 GO:0005506|GO:0016705
Lsi07g01388 469 Gene3D Cytochrome P450 22 468 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g01388 469 PRINTS E-class P450 group I signature 335 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g01388 469 PRINTS E-class P450 group I signature 288 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g01388 469 PRINTS E-class P450 group I signature 375 399 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g01388 469 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g01388 469 PRINTS E-class P450 group I signature 268 285 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g01388 469 PRINTS E-class P450 group I signature 419 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g01388 469 PRINTS E-class P450 group I signature 409 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g01388 469 PANTHER CYTOCHROME P450, FAMILY 87, SUBFAMILY A, POLYPEPTIDE 2 8 466 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01276 Lsi-Chr3:23551466 Lsi07g01388 Lsi-Chr7:20145497 0 dispersed
Lsi03g01277 Lsi-Chr3:23557615 Lsi07g01388 Lsi-Chr7:20145497 0 dispersed
Lsi07g00205 Lsi-Chr7:2230672 Lsi07g01388 Lsi-Chr7:20145497 8.01E-98 dispersed
Lsi07g01388 Lsi-Chr7:20145497 Lsi09g01780 Lsi-Chr9:26553886 2.02E-151 dispersed
Lsi07g01381 Lsi-Chr7:20076250 Lsi07g01388 Lsi-Chr7:20145497 8.46E-19 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01388 - - csv:101209473 914.064