Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01390 ATGCGTCAATTACTAATCCGTTGTGCTGATTTCATTTCTCAATCTGATTTCCTTTCAGCTCATCATCTTCTTTCAATTCTCTCTTCAAATTCCTCTCCTTATGGTGATTCCACTGAAAGATTACTTCATTACTTCTCTTCTTCTCTTTCTCATCGTCTCCCTTCAAATTCTTCTTCTTCTTCTTCTTTTCTTCTTCATCATCATCATCATCTAGAACATCAAGAACAAGATTATAATGATGAAAAGATCCAATCTTGTTACTTATCATTGAATCAAATCACACCCTTTATTAGATTCACTCATTTGACTGCAAATCAAGCCATTTTGGAAGGTATTGAAGAGAGTGGAATGATTCATGTTTTGGATTTTGATATTATGCATGGTGTTCAATGGCCTCCTCTTATGCAAGCTTTGGCTGATCGTTTTCCTTCTCCCATGCTTCGTATTACTGCTACTGGTCTTGATCTTAACTTCCTTCATAAGACTGGTGATAGGCTTTCTAAATTTGCTCAATCACTTGGTTTGAGGTTTCAGTTTCATCCTCTTCTTCTTCTTCATGATCGTGATCATCACCGCGTTATCCCCACCGCTCTTACACTCTTCCCCGATGAAGCTCTCGCCGTCAACTGCGTTCTCTACTTGCACAGGCTAATGAAGGACGATGTTCGAGTATTGCTTCATAAAATCAAGGCATTGAATCCAAAAGTGGTGACTATAGCTGAAAAGGAAGCAAATTTCAACCACCCTTTATTCATGCAAAGATTTCTAGAGGCATTGAATCATTACTCTCTAATATTTGATTCATTAGAAGCAACATTGCCTCCAAATAGTAGAGAAAGATTAGCAGTGGAGCAAGTTTGGTTTGGGAGGGAAATAAACGACGTCGTTTCAGGAGAAGTGAATAATAATAATAATAATAAGAGAAGACAACACTATGAAAGGTATGAATCATGGAAGATAATGCTTAAAAGTTTGGGGTTTTCTAATATTCCTTTAAGCCCTTTTGCTCTTTCACAAGCCAAACTTCTTCTTAGACTTCATTATCCTTCTGAAGGTTATCATCTTCAAATCCTTCATGATTCCCTTTTCCTTGGTTGGCAAAATCAACCCCTTTTTTCAGTCTCTTCATGGCATTGA 1137 37.29 MRQLLIRCADFISQSDFLSAHHLLSILSSNSSPYGDSTERLLHYFSSSLSHRLPSNSSSSSSFLLHHHHHLEHQEQDYNDEKIQSCYLSLNQITPFIRFTHLTANQAILEGIEESGMIHVLDFDIMHGVQWPPLMQALADRFPSPMLRITATGLDLNFLHKTGDRLSKFAQSLGLRFQFHPLLLLHDRDHHRVIPTALTLFPDEALAVNCVLYLHRLMKDDVRVLLHKIKALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATLPPNSRERLAVEQVWFGREINDVVSGEVNNNNNNKRRQHYERYESWKIMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHLQILHDSLFLGWQNQPLFSVSSWH 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20215979 20217644 - Lsi07G013900.1 Lsi07g01390 667812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01390 378 PANTHER SCARECROW-LIKE PROTEIN 18 1 378 IPR030017 GO:0005634|GO:0010223
Lsi07g01390 378 ProSiteProfiles GRAS family profile. 1 378 IPR005202 -
Lsi07g01390 378 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 378 IPR005202 -
Lsi07g01390 378 Pfam GRAS domain family 1 377 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01390 Lsi-Chr7:20215979 Lsi03g00413 Lsi-Chr3:4715972 3.30E-75 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25689 PF03514 GRAS 1.50E-115 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01390 - - csv:101213853 609.757