Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01391 TCTAATTCTTATAAGAATCGAATCCACTCGTCTCTTACACGACAAATTGCACCATTGTCACTCAGTACATATGTCGCATCGTGTCGTGTCGTTCCAGACAACTCATTCACTGCCCATTCCCGAGGTTTCAACTGTGAACAGTGGTACATTCCGGCAACCCACGAAGCTTTACTTCAACTACAACCACCGCACACGACGGCGGAACAAACCGGGAACGGCCGAATTGAACAACGGTTGATGGGTTCTTGTCATTCGTCTCCTAAAGGGCGGCAGAGCAGAGGCGGCGTTTATTCTGCAGCCGCAGCGCCGGGGGAGGCTCCGACGGCTTCTACAACAGAGTTATTTTCTTCTTCTTCTTCTTCATTTTTGTACTCGACGAGCAGTAAGTCGCGTTGGTGGAAGAAGAATTCGACTAAAACTTTTGGGGTTGGGGTTTGTTCAGAGAAGGTCCATGAATTTGAGGTTCCGGGGAGGATTTGTTCAAATGGGTCATCGAGAATTGCTTGTTTGTATACGCAGCAGGGGAAGAAAGGGGTTAATCAAGACGCCATGGTTGTGCAGGAGAGCAATTTGTGGACTGAAGGTTCATGGCAGTTGCAAGCAGATTTTTTAGATCAGAATTTCAGTTCAAGAAGAGATACAGTATTTTGCGGAGTATTTGATGGACATGGTCCTTTTGGACATATGGTTGCGAAAAAAGTTCGTGATACCCTCCCTCTAATCCTGTGTACACAATGGACATCTAAATCAAATGAAGATCAAAGCAACCTCTTTAAGACGAGACATTCCCAAAGTTCAAATTCTGAAGATTCTGTTGCTCTAGATGGTGATGAAGATTCTTACAAGTCATTGGAGGCCGAAGAAAATGAAAAATTCCCCAAGATGTTTCTACCACTCAAAGTATCTTTACTGAAGTCCTTCAAATTAATGGATAAAGAGTTGAAACTGCACCCCAAAATTGATTGTTTCTGCAGTGGATCAACGGCTGTGACTCTAATAAAGCAGGGTCAGAACCTTGTACTTGGAAATGTTGGTGACTCGAGAGCGGTGCTGGCTACGATAGATGAAGACAATTCTTTGATTCCAGTTCAATTAACGGTGGACTTGAAACCTGACCTTCCTGGTGAAGCTGCTAGGATCCAGCAATGCAAAGGAAGGGTCTTCGCTTTGCAGGATGAGCCCGAAGTTGCACGAGTATGGTTGCCAAATAATGATTCACCTGGTTTGGCAATGGCGAGAGCTTTTGGGGACTTTTGTCTGAAGGATTTCGGTCTTATTTCTGTTCCCGATGTTTATTATCGTCACCTTACCGCGAGAGATCAGTTTGTAATTCTTGCCACTGACGGGTTTTCTATTTGTATGGAAGAAGGGTGCATTTTCTGCTCGCTAGTTCCCCAGGATATCGATATCCTCGGCATCGAGCTAGTTTGGGATGTTCTTTCGAATAAAGAAGCTATCGAGATTGTTGCGTCAGCCCCTTCTCGGGAAACAGCAGCCAGAGCTCTTGTCGACTGTGCCGTTCGTGCATGGAGGCTGAAATATCCTACATCCAAGAATGACGATTGCGCTGTTGTATGTCTCTTTCTTGAGTATGAGCCTGAAGAAGAAAACACGGAAACTTGCACAAAACCAGTGGAAGAAGTTCTGGCCACACCAAGCGATGACACAAAAGACATTGAATTAGTTGACTGCGATGATCGTAGAACGACTGTTATCGAGCAGTCAGGCACTCTACAAAGCTCTAATGAGATTGTACCTGTCTCCGACTCAACGGATGAGAAGGCAGTAGCTAGAGGCCGAAACCCGTCAAAGAGAAGCTTAGCTGAGTGCATCTCAAATGAAGAGGAGGAATGGTCTGCATTGGAGGGTATTACCAGAGTGAATAGTCTACTAAGCCTTCCCAGGTTCCTATCTGGTGACAAAAGATCAGGCAGTTGGAGGAAGTGGCTATGA 1953 45.37 SNSYKNRIHSSLTRQIAPLSLSTYVASCRVVPDNSFTAHSRGFNCEQWYIPATHEALLQLQPPHTTAEQTGNGRIEQRLMGSCHSSPKGRQSRGGVYSAAAAPGEAPTASTTELFSSSSSSFLYSTSSKSRWWKKNSTKTFGVGVCSEKVHEFEVPGRICSNGSSRIACLYTQQGKKGVNQDAMVVQESNLWTEGSWQLQADFLDQNFSSRRDTVFCGVFDGHGPFGHMVAKKVRDTLPLILCTQWTSKSNEDQSNLFKTRHSQSSNSEDSVALDGDEDSYKSLEAEENEKFPKMFLPLKVSLLKSFKLMDKELKLHPKIDCFCSGSTAVTLIKQGQNLVLGNVGDSRAVLATIDEDNSLIPVQLTVDLKPDLPGEAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDVYYRHLTARDQFVILATDGFSICMEEGCIFCSLVPQDIDILGIELVWDVLSNKEAIEIVASAPSRETAARALVDCAVRAWRLKYPTSKNDDCAVVCLFLEYEPEEENTETCTKPVEEVLATPSDDTKDIELVDCDDRRTTVIEQSGTLQSSNEIVPVSDSTDEKAVARGRNPSKRSLAECISNEEEEWSALEGITRVNSLLSLPRFLSGDKRSGSWRKWL 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20240767 20249827 - Lsi07G013910.1 Lsi07g01391 667813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01391 650 MobiDBLite consensus disorder prediction 255 271 - -
Lsi07g01391 650 PANTHER ALPHABET, ISOFORM E-RELATED 80 449 - -
Lsi07g01391 650 PANTHER ALPHABET, ISOFORM E-RELATED 470 634 - -
Lsi07g01391 650 SUPERFAMILY PP2C-like 161 530 IPR036457 -
Lsi07g01391 650 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 470 634 - -
Lsi07g01391 650 Gene3D - 147 539 IPR036457 -
Lsi07g01391 650 SMART PP2C_4 156 527 IPR001932 -
Lsi07g01391 650 MobiDBLite consensus disorder prediction 255 277 - -
Lsi07g01391 650 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 80 449 - -
Lsi07g01391 650 Pfam Protein phosphatase 2C 291 456 IPR001932 -
Lsi07g01391 650 ProSiteProfiles PPM-type phosphatase domain profile. 167 529 IPR001932 -
Lsi07g01391 650 CDD PP2Cc 166 529 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01391 Lsi-Chr7:20240767 Lsi11g00963 Lsi-Chr11:15029915 4.07E-160 dispersed
Lsi07g01391 Lsi-Chr7:20240767 Lsi11g01535 Lsi-Chr11:23687834 6.13E-140 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01391 - - cmo:103490977 940.643