Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01394 ATGAGTTCTGCTGGAGACTTTCGACCAGGCCAGAAGGTGATGATCCATATGGAAGATGAACAGGATGGTGAGCTACCAATTCCATCTGGTCTCGTTACTGGCATAAACTTTAGTGTCTCAACTCAGCAAGATACAGTAATAATGTTAGAGCTACCAATTCCATCTGGTCTCGTTACTGGCATAAACTTTAGTGTCTCAACTCAGCAAGATACAGAGAATATAGCAGTAATGACAGTTGATGCATCCAACGAGGTATCTGATCCTAAGTTGGGACTTCCGAATCCATCTTATCAGTGCACCACATGTGGTGCTAGCTCCCTAAAATCTTGTGAAGGTTTAACAAGAGGAGTTATTCACTCGACCAAGGACTCTCCACCTCATGGTGACGTCTTTGAGGTTGATTCTGAGGTTGAGGATCCAACATCTGATTATCATCGACCTAAAGGTTGCAGATATTGTTTTGGAAGTCTAAAGGATTGGTATCCGCCTATGAGGTTTAAGCTTTCAACTACTGATATGTTTAGAAAAAGTATGATTATGGTGGAAGTGAAAGAAAATATGTCGAAGAAATATCAAAAGAGGGTGGCTAAAGGAGGATTGCCTTCAGATTATTGGAATTTTATCCCTAAAGATGAACAACAGGAAGACAGTTATTGTAGACCAAACAGGAAAATCCTAACACATGCTCAGGTTCATTATTTGTTGAAAGACATCGACCCAAAGTTTCTTAAAAAGTTTGTGCCTGCAACAGATTCACTGTTTCTAAACTCTTTCCCAGTTACTCCGAACAGTCATCGTGTGACTGAAATGGCACATTCATTTTCAAATGGACAGCGTTTGATCTTTCTTAGCCCAGAGAAGTTACAAAGTAAAGATTTGGTTTACCAGCAAAAGAAAATTAAGGATACTGCTACTAGCTCATATGGTCTAAGATGGATCAAAGATGTTGTTCTTGGAAAGCGGAGCGACCATTGTTTTCGCATGGTTGTTGTTGGCGATCCAAACATTGAGTTAAGTGAAATTGGCATACCTTGTCATGTAGCAGAGAGGTTGCAAATATCTGAACATCTGAGTTCTTGGAATATGAAGAAATTAAGTACTTCTTGTTACCTTCATCTTGTCGAAAAGGGAGAGATCTATGTTCGTCGTGAAGGTCGTCTAGTTCGTGTACGTAATGTTCTTGAACTTAATATGGGGGACACTATATATAGGCCCCTAGCTGACGGGGATGTTGTGCTGGTTAATCGACCACCATCCATACATCAGCACTCACTAATTGCTTTATCTGTCAAGCTTCTTCCTGTCTCCTCAGTTCTTTCCTTAAACCCACTTTGTTGTTCTCCTTTTCGTGGAGATTTTGATGGTGACTGCCTTCATGGTTATGTTCCTCAATCACTCGAAGCCAGAGTGGAGGTCAGAGAGCTGGTTTCTCTAGATAGACAGCTAATTAATGGCCAAAGTGGTAGAAATCTGCTGTCACTTAGTCATGATAGTTTAACTGCTGCTCATTTAATTATGGAAGATGGAGTTTCGTTAAATCTTTTCCAGATGCAGCAGTTGCAAATGCTTACATTACATCAGTTGTTGTCCCCAGCAATTTTAAAAGCTCCTTTGCTTAGAAATTGTGCTTGGACCGGTAAACAGTTATTCAGCACCCTCCTACCTCCTGATTTTGATTATTCTTCTCCTTCTCACTGTGTTTTTATTAAAAATGGAGAATTAATATCTTCGGAAGGATCTTACTGGCTCCGCGATAGTGGCAGAAACCTCTTCCAAGCGCTAATAGAACACTGTGAGGGCAAGACCCTTGACTACTTGCACGATGCTCAAGGTGTTCTTTGTGAATGGTTATCAATGAGGGGCTTGAGCGTTTCATTGTCAGACTTGTACCTATCCGTGGATTCATACTCTCACAAAAACATGATGGATGATATCTTTTGTGGGTTACAGGAAGCTGAGGAAACATGTAATTTAAAGCAGCTGATGGTGGATTCACATAAAGATATCCTTACTGGAGATGACGAAGATAATCAACACGTGTTATCTATTGCGGTGGAGCGTTTAAGTTATGAGAAGCAGAAATCTGCTGCTCTAAATCAAGCTTCTGTTGATGCTTTCAAGAAAGTTTTCCGGGATATACAAAATCTAGTTTACAAGTATTCTGGTAAAGACAATTCACTTCTTACTATGTTCAAGGCTGGAAGCAAGGGTAATTTGCTGAAACTAGTTCAGCATAGCATGTGTCTTGGCTTGCAACACTCTTTGGTTACTCTATCCTTTAGCCTTCCACATAAGCTCACGTGTTCTGCATGGAACAGTCAGAAGATGCCTCGTTATATTCAGAAGGATGGTCTTCCTGACCGTACACCGTCTTTCATACCATATGCTGTGGTTGAGAGTTCCTTTCTCTCAGGGCTTAATCCATTTGAGTGTTTTGCTCACTCGGTGACAAATCGAGATAGCTCTTTCAGTGACAATGCTGAAGTTCCTGGCACTTTGACACGAAAACTTACGTTTCTAATGCGGGATATATATACTGCATATGATGGAACAGTGAGGAATGCATATGGAAATCAGCTGGTTCAGTTTTCTTATGACATTGATAGACCTACTAGCGTCTCTAATGAATTGGATGGTGAGAATAATAATAGAGATCGTGATATAGGTGGTCATCCTGTTGGGTCATTGGCTGCCTGTGCCATGTCAGAAGCTGCATATAGTGCTCTGGACCAACCAATTAGTCTACTTGAAGCTTCCCCATTGCTAAACCTAAAGAGAGTGCTGGAGTGTGGTTCAAAGAGGAATAGTACCAAACAAACATTTTCATTGTTCTTATCAGAGAAACTTTCAAAACGAAGTTATGGATTTGAGTATGGAGCTTTAGGAGTTAAGAACCATTTAGAAAGAGTAATATTTAAAGATATAGTGTCTAATGTCATGATAACCCCTCCCGGAAAAAGCATTTTAGTCCTTGGGTTTGCCACTTTCATGTATGCAAGGGATTGTCCTCTAGCTGATTCACTGAGAGAAGATGGTGATACGGTGTGCTTAACTGTTACAATAGCTGAAAACACAAAAAACTCTTTCCTGCAATTAGATTTCATTCAAGATTTGCTGATTCATTTCCTTCTTGGTACAGTTATAAGAGGCTTTGCTGAGATTGACAGGGTAGACATTGCATGGAATGACCGGCCAAAGGTACCAAAACCTCGTTGTAATCATGGTGAGCTCTACTTGCGGGTGACCATGTCTGGAGAAGGAAATTCAAGATTTTGGGCAACTCTTATGAATAATTGCCTCCCTATAATGGATTTGATTGATTGGTCTCGTAGTCATCCAGATAACACCCATAGTCTCTGTTTGGCATACGGAATAGATTCTGGATGGAAGTACTTTCTCAACAGTTTGGAGTCTGCAACGTTGGATATTGGTAAAACAATACGTCCTAAACATTTGCTGCTTGTTGCAAATTCTCTTTCGGCTACAGGAGAGTTTATTGGCTTAAATGTGAAAGGATTGTCACATCAAAGGGAACATGCTTTGGTCAAAACACCCTTTATGCAAGCTTGCTTCTCAACTCCTGGCGCTTGTTTTGTTAAAGCTGCCAAGGCTGGAATTAAGGACAACCTGTCAGGAAGTTTAGATGCCTTGGCATGGGGGAGAATTCCTTCACTGGGAACCGGGGGACAGTTCGATATCCTATATTCTGGGAGGGGGCATGAGCTTAATAAGCCTGTCGATGTTTATAATCTACTGGGTGGCCAAAGCATTTGTGAGAAGCAGAATGCAAAGATCGAATCCCTTGATAAGAACAATATATCTGAGAAATATAGTGCTCAGTTAGTGCTTAAAAATGGCGGTTCTACCATTAAAGGACTTAAAAAGCTGGATAGTTATCTCAGATTGTTCCTTTTTAAAATTTCGAATGCTGCTGAAATGCCATATGCAGAATGGAGTTGGAGTTCTAAAAGGGATGAAAAGATTGGTGTTGGAGCACAGGACATAAAGGTTGGTAACCACTCAAAGTATCAAAATACACGTTGCTTCGTATTGATACGATCAGATGGAACGACAGAAGATTTTTCGTACCACAAGTGTGTTTTAGGTGCTTTGGAGATCATTGCCCCGCATAGAGTAAAGGGTTATCAGTCGAAATGGATGCAAGAAAAGTATGAGTGA 4179 40.58 MSSAGDFRPGQKVMIHMEDEQDGELPIPSGLVTGINFSVSTQQDTVIMLELPIPSGLVTGINFSVSTQQDTENIAVMTVDASNEVSDPKLGLPNPSYQCTTCGASSLKSCEGLTRGVIHSTKDSPPHGDVFEVDSEVEDPTSDYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVAKGGLPSDYWNFIPKDEQQEDSYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLTLHQLLSPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVFIKNGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYIQKDGLPDRTPSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDGENNNRDRDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVIFKDIVSNVMITPPGKSILVLGFATFMYARDCPLADSLREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNHGELYLRVTMSGEGNSRFWATLMNNCLPIMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKTIRPKHLLLVANSLSATGEFIGLNVKGLSHQREHALVKTPFMQACFSTPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSYLRLFLFKISNAAEMPYAEWSWSSKRDEKIGVGAQDIKVGNHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGALEIIAPHRVKGYQSKWMQEKYE 1392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20273952 20290880 - Lsi07G013940.1 Lsi07g01394 667816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01394 1392 MobiDBLite consensus disorder prediction 118 140 - -
Lsi07g01394 1392 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 1000 1301 - -
Lsi07g01394 1392 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 50 981 - -
Lsi07g01394 1392 Gene3D RNA polymerase Rpb1, domain 3 486 634 IPR042102 -
Lsi07g01394 1392 Pfam RNA polymerase Rpb1, domain 3 482 629 IPR007066 GO:0003677|GO:0003899|GO:0006351
Lsi07g01394 1392 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 53 1234 - -
Lsi07g01394 1392 Gene3D - 314 485 - -
Lsi07g01394 1392 MobiDBLite consensus disorder prediction 125 140 - -
Lsi07g01394 1392 Gene3D - 1315 1369 - -
Lsi07g01394 1392 CDD RNAP_IV_RPD1_N 66 853 IPR040403 -
Lsi07g01394 1392 Pfam RNA polymerase Rpb1, domain 4 696 756 IPR007083 GO:0003677|GO:0003899|GO:0006351
Lsi07g01394 1392 SMART rpolaneu7 251 506 IPR006592 GO:0003677|GO:0003899|GO:0006351
Lsi07g01394 1392 Pfam RNA polymerase Rpb1, domain 2 319 477 IPR000722 GO:0003677|GO:0003899|GO:0006351
Lsi07g01394 1392 Gene3D RNA polymerase ii 352 404 - -
Lsi07g01394 1392 Pfam Protein of unknown function (DUF3223) 1323 1367 - -
Lsi07g01394 1392 Gene3D - 655 806 IPR038120 -
Lsi07g01394 1392 PANTHER DNA-DIRECTED RNA POLYMERASE 1000 1301 IPR045867 GO:0003899|GO:0006351
Lsi07g01394 1392 PANTHER DNA-DIRECTED RNA POLYMERASE 50 981 IPR045867 GO:0003899|GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01394 K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] - csv:101214578 2353.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01394 Lsi-Chr7:20273952 Lsi09g00796 Lsi-Chr9:9098764 2.99E-81 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g409 . . Bda06g00069 . . Bpe07g00129 . . Cmo06g00731 . . . . . . . . . . . . . . . Cla10g00343 Cam10g0357 Cec10g0371 Cco10g0365 Clacu10g0358 Cmu10g1195 Cre10g0608 . . Cone6ag0744 Cone9ag0748 Lsi07g01394 . . Cme06g02680 . . . . . . . Bma12g00105 . . . . . Car06g00635 . Cpe08g00802 . . . . . . . . . . . . . . . . Csa03g00363 Chy06g01960 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005483 2 9 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 40